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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:
  • plastid 1
  • mitochondrion 3
  • peroxisome 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, peroxisome
Any Predictor:cytosol, mitochondrion, peroxisome, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra027106.1-P Field mustard cytosol 77.39 77.39
CDY64867 Canola cytosol 73.94 74.33
Bra039251.1-P Field mustard cytosol 73.67 74.06
Bra031467.1-P Field mustard cytosol 73.67 73.47
AT5G07200.1 Thale cress cytosol, nucleus, peroxisome 73.94 73.16
CDY64866 Canola cytosol, nucleus, peroxisome 59.04 71.61
CDY60083 Canola vacuole 73.94 69.15
CDY12880 Canola cytosol, nucleus, vacuole 77.66 69.03
CDY44829 Canola cytosol 70.74 68.03
PGSC0003DMT400000036 Potato cytosol 59.04 60.82
Solyc01g093980.2.1 Tomato cytosol 58.51 60.44
AT5G51810.1 Thale cress cytosol, nucleus, peroxisome 60.64 60.32
AT4G25420.1 Thale cress cytosol, nucleus, peroxisome 60.37 60.21
VIT_15s0048g01320.t01 Wine grape cytosol 61.17 59.9
GSMUA_Achr8P19120_001 Banana cytosol, extracellular, peroxisome 47.34 57.79
KRH65199 Soybean cytosol 56.91 56.02
GSMUA_Achr2P01010_001 Banana cytosol, peroxisome, plastid 46.54 55.91
KRH48309 Soybean cytosol 58.24 55.3
HORVU5Hr1G124120.1 Barley cytosol 52.93 55.28
TraesCS5D01G566200.1 Wheat cytosol, peroxisome, plastid 52.93 55.12
TraesCS4A01G319100.1 Wheat cytosol, peroxisome, plastid 52.39 53.97
TraesCS5B01G560300.1 Wheat cytosol, peroxisome, plastid 52.66 53.95
EER90481 Sorghum cytosol 52.39 51.98
GSMUA_AchrUn_... Banana cytosol 44.15 51.39
TraesCS3D01G393900.1 Wheat cytosol 47.34 50.0
Os03t0856700-02 Rice cytosol, mitochondrion 49.2 49.73
TraesCS3A01G399800.1 Wheat cytosol 47.07 49.44
HORVU3Hr1G089980.2 Barley cytosol 46.01 48.46
TraesCS3B01G432800.1 Wheat cytosol 46.28 48.33
TraesCS3D01G394000.1 Wheat cytosol, peroxisome, plastid 46.01 48.19
Os07t0169700-01 Rice plasma membrane 46.81 47.96
Zm00001d034898_P001 Maize plastid 51.33 47.77
EER95912 Sorghum cytosol 44.95 44.24
Zm00001d007894_P001 Maize cytosol 45.21 43.15
AT1G44090.1 Thale cress mitochondrion 42.29 41.3
AT3G19010.1 Thale cress cytoskeleton, cytosol, peroxisome 28.19 30.37
AT3G19000.1 Thale cress cytoskeleton, cytosol, peroxisome 27.13 28.98
Protein Annotations
MapMan:11.6.1.5Gene3D:2.60.120.330EntrezGene:842389ProteinID:AAG51653.1ProteinID:AEE33755.1ArrayExpress:AT1G60980
EnsemblPlantsGene:AT1G60980RefSeq:AT1G60980TAIR:AT1G60980RefSeq:AT1G60980-TAIR-GEnsemblPlants:AT1G60980.1TAIR:AT1G60980.1
Symbol:ATGA20OX4Unigene:At.52295InterPro:DIOX_NEMBL:DQ056503GO:GO:0000003GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0006629GO:GO:0007154GO:GO:0007165GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009416GO:GO:0009628GO:GO:0009653
GO:GO:0009686GO:GO:0009719GO:GO:0009740GO:GO:0009791GO:GO:0009826GO:GO:0009908
GO:GO:0009987GO:GO:0016043GO:GO:0016049GO:GO:0016491GO:GO:0040007GO:GO:0046872
GO:GO:0055114InterPro:IPNS-likeInterPro:IPR005123InterPro:IPR027443RefSeq:NP_176294.1InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171PFAM:PF14226PO:PO:0009005PRINTS:PR00682PFscan:PS51471PANTHER:PTHR10209
PANTHER:PTHR10209:SF140UniProt:Q9C955SUPFAM:SSF51197UniParc:UPI00000483C6::
Description
GA20OX4Gibberellin 20 oxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C955]
Coordinates
chr1:+:22452573..22454140
Molecular Weight (calculated)
43135.6 Da
IEP (calculated)
7.613
GRAVY (calculated)
-0.442
Length
376 amino acids
Sequence
(BLAST)
001: MECIIKLPQR FNKNKSKKNP LRIFDSTVLN HQPDHIPQEF VWPDHEKPSK NVPILQVPVI DLAGFLSNDP LLVSEAERLV SEAAKKHGFF LVTNHGVDER
101: LLSTAHKLMD TFFKSPNYEK LKAQRKVGET TGYASSFVGR FKENLPWKET LSFSFSPTEK SENYSQTVKN YISKTMGDGY KDFGSVYQEY AETMSNLSLK
201: IMELLGMSLG IKREHFREFF EDNESIFRLN YYPKCKQPDL VLGTGPHCDP TSLTILQQDQ VSGLQVFVDN QWQSIPPIPQ ALVVNIGDTL MALTNGIYKS
301: CLHRAVVNGE TTRKTLAFFL CPKVDKVVKP PSELEGERAY PDFTWSMFLE FTMKHYRADM NTLEEFTNWL KNKGSF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.