Factsheet for PGSC0003DMT400042644

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086432	Potato	cytosol	42.86	92.31
PGSC0003DMT400090397	Potato	cytosol	92.86	83.65
PGSC0003DMT400092587	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	37.8	78.88
PGSC0003DMT400090198	Potato	mitochondrion	20.54	76.67
PGSC0003DMT400062314	Potato	cytosol	80.95	71.96
PGSC0003DMT400036523	Potato	cytosol	66.07	71.38
PGSC0003DMT400088528	Potato	cytosol, peroxisome, plastid	26.19	68.22
PGSC0003DMT400088638	Potato	cytosol	49.7	66.01
KRH09174	Soybean	cytosol	59.23	65.46
PGSC0003DMT400071866	Potato	cytosol	72.32	64.8
VIT_16s0022g02310.t01	Wine grape	cytosol	69.94	61.52
KRH38652	Soybean	cytosol	69.05	60.73
KRH35405	Soybean	cytosol	65.77	60.55
KRG91415	Soybean	cytosol	67.56	59.27
PGSC0003DMT400091205	Potato	cytosol, nucleus, peroxisome	27.68	58.86
PGSC0003DMT400000036	Potato	cytosol	62.2	57.26
PGSC0003DMT400091526	Potato	cytosol	40.18	56.49
PGSC0003DMT400097234	Potato	cytosol, mitochondrion, plastid	21.13	56.35
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	59.23	55.12
HORVU5Hr1G124120.1	Barley	cytosol	58.93	55.0
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	58.93	54.25
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	49.7	54.22
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	58.93	53.95
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	49.11	52.72
EER90481	Sorghum	cytosol	57.44	50.92
PGSC0003DMT400086504	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	16.96	50.44
GSMUA_AchrUn_...	Banana	cytosol	47.92	49.85
Os03t0856700-02	Rice	cytosol, mitochondrion	54.76	49.46
PGSC0003DMT400089703	Potato	nucleus	21.73	48.67
Zm00001d034898_P001	Maize	plastid	56.85	47.28
TraesCS3D01G393900.1	Wheat	cytosol	48.21	45.51
HORVU3Hr1G089980.2	Barley	cytosol	48.21	45.38
TraesCS3A01G399800.1	Wheat	cytosol	47.92	44.97
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	47.92	44.85
Os07t0169700-01	Rice	plasma membrane	48.51	44.41
TraesCS3B01G432800.1	Wheat	cytosol	47.02	43.89
EER95912	Sorghum	cytosol	46.73	41.1
Zm00001d007894_P001	Maize	cytosol	47.02	40.1
PGSC0003DMT400090419	Potato	cytosol	20.83	36.27
PGSC0003DMT400066716	Potato	cytosol	27.98	26.55
PGSC0003DMT400066714	Potato	cytosol	26.19	25.07
PGSC0003DMT400066712	Potato	cytosol	8.33	17.72

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	UniProt:M1BDE3	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226
EnsemblPlantsGene:PGSC0003DMG400016537	PGSC:PGSC0003DMG400016537	EnsemblPlants:PGSC0003DMT400042644	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140
SUPFAM:SSF51197	UniParc:UPI000296CB86	:	:	:	:

Description

Gibberellin 20-oxidase-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400016537]

Coordinates

chr6:-:49357388..49358996

Molecular Weight (calculated)

38408.6 Da

IEP (calculated)

6.441

GRAVY (calculated)

-0.354

Length

336 amino acids

Sequence
(BLAST)

001: MTTNSIITNG KSPMLGEEKP LIFDASHMKN ESNIPTQYIW PDDEKPCLVA QELHVPLIDL RGFFSGDPAA TQQASRLVGE ACRSHGFFLV VNHGVDSNLI
101: SRAHRYMDMF FDMPFSVKQK AQRKIGEHCG YASSFTGRNV YQEYCNSMNT LSLRIMDLLG ISLGVQKSHF KEFFEDNESI MRLNYYPRCL KPELTLGTGP
201: HYDPTSLTIL HQDCVSGLQV FVDNEWYSIH PNFSAFVVNI GDTFMVLSNG RYKSCLHRAV VNNTTPRKSL AFFLCPDKDK VVSPPTELVD YNNPRLYPDF
301: TWPAFLEFTQ KHHRAETNTL QAFSMWLQEN NAEAYE

Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)

001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI

Arabidopsis Description

GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.