Factsheet for GSMUA_Achr6P25910_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P32560_001	Banana	cytosol, nucleus, peroxisome	64.76	62.58
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	64.13	61.96
GSMUA_Achr11P...	Banana	cytosol	73.33	61.27
GSMUA_Achr4P16380_001	Banana	cytosol	66.98	55.38
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	53.33	54.55
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	52.38	52.72
Zm00001d042611_P001	Maize	cytosol	62.22	50.78
Os01t0883800-02	Rice	cytosol	60.63	49.1
GSMUA_AchrUn_...	Banana	cytosol	49.52	48.3
CDY71240	Canola	cytosol, peroxisome, plastid	39.68	46.82
HORVU3Hr1G090980.3	Barley	plastid	60.32	45.89
TraesCS3B01G439900.1	Wheat	plastid	60.63	45.37
Os05t0421900-00	Rice	cytosol	57.78	44.61
OQU87995	Sorghum	plastid	62.54	44.57
Bra014019.1-P	Field mustard	cytosol	50.16	44.26
TraesCS1A01G263600.1	Wheat	cytosol	55.87	44.11
TraesCS3D01G401400.1	Wheat	plastid	60.63	43.81
TraesCS1B01G274200.1	Wheat	cytosol	57.14	43.69
TraesCS3A01G406200.1	Wheat	plastid	61.27	43.67
TraesCS1D01G263700.1	Wheat	cytosol	56.19	42.96
Zm00001d012212_P001	Maize	plastid	62.54	42.55
CDY70184	Canola	cytosol	41.27	39.88
AT1G44090.1	Thale cress	mitochondrion	48.57	39.74
HORVU1Hr1G063780.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	46.98	35.58
CDY36334	Canola	cytosol	12.06	31.15
OQU78027	Sorghum	cytosol	47.94	30.32
GSMUA_Achr7P08240_001	Banana	cytosol	24.44	24.52
GSMUA_Achr7P08230_001	Banana	cytosol	23.81	23.22

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr6G25910_001	EnsemblPlants:GSMUA_Achr6P25910_001
EnsemblPlants:GSMUA_Achr6T25910_001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M0TA86	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF129	SUPFAM:SSF51197	UniParc:UPI000296331A
SEG:seg	:	:	:	:	:

Description

Gibberellin 20 oxidase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G25910_001]

Coordinates

chr6:+:26881996..26883403

Molecular Weight (calculated)

35308.9 Da

IEP (calculated)

6.925

GRAVY (calculated)

-0.292

Length

315 amino acids

Sequence
(BLAST)

001: MDSVSPVTLD LNKEEGHCSN GAVVFDTSFL RRQAKIPESF VWPRNDRPHP LEELEVPVVD LRGLFEGDEA SISRAAEASR AACVRHGFFQ VINHKPGSAW
101: GYVGAHADRF ASKLPWKETL TFGYDYGERG DGVVDYFTSK LGEGFEPMGR VYRRYCEAMK DLSLSIMELL GISLGVGREY YRQFFEDGSS IMRCNSYPLC
201: QEPELALGTG PHCDPTALTI LLQDQVGGLQ VFTEGKWQAV RPVRSALVIN IGDTFMALSN GRYKSCLHRA VVNSERERLS LAFFVCPRGD RVTHYRADTT
301: TLQSFARRRF LASSP

Best Arabidopsis Sequence Match ( AT1G44090.1 )
(BLAST)

001: MCIYASRQTV CPYLTPFKVK RPKSREMNSS DVNFSLLQSQ PNVPAEFFWP EKDVAPSEGD LDLPIIDLSG FLNGNEAETQ LAAKAVKKAC MAHGTFLVVN
101: HGFKSGLAEK ALEISSLFFG LSKDEKLRAY RIPGNISGYT AGHSQRFSSN LPWNETLTLA FKKGPPHVVE DFLTSRLGNH RQEIGQVFQE FCDAMNGLVM
201: DLMELLGISM GLKDRTYYRR FFEDGSGIFR CNYYPPCKQP EKALGVGPHN DPTAITVLLQ DDVVGLEVFA AGSWQTVRPR PGALVVNVGD TFMALSNGNY
301: RSCYHRAVVN KEKVRRSLVF FSCPREDKII VPPPELVEGE EASRKYPDFT WAQLQKFTQS GYRVDNTTLH NFSSWLVSNS DKKST

Arabidopsis Description

GA20OX5Gibberellin 20 oxidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q4PT02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.