Factsheet for Zm00001d042611_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0883800-02	Rice	cytosol	83.94	83.29
OQU87995	Sorghum	plastid	94.3	82.35
Zm00001d012212_P001	Maize	plastid	94.3	78.62
HORVU3Hr1G090980.3	Barley	plastid	82.64	77.05
TraesCS3B01G439900.1	Wheat	plastid	82.38	75.53
TraesCS3D01G401400.1	Wheat	plastid	82.9	73.39
TraesCS3A01G406200.1	Wheat	plastid	82.64	72.17
GSMUA_Achr6P25910_001	Banana	cytosol	50.78	62.22
GSMUA_Achr8P32560_001	Banana	cytosol, nucleus, peroxisome	50.78	60.12
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	50.0	59.2
GSMUA_Achr4P16380_001	Banana	cytosol	58.29	59.06
VIT_18s0001g01390.t01	Wine grape	cytosol	51.3	52.38
GSMUA_Achr11P...	Banana	cytosol	51.04	52.25
KRH64020	Soybean	cytosol	51.55	50.77
KRH53918	Soybean	cytosol, nucleus, peroxisome	49.74	50.66
KRH16465	Soybean	cytosol, nucleus, peroxisome	48.96	50.27
KRH18058	Soybean	cytosol	48.7	50.13
VIT_04s0044g01650.t01	Wine grape	cytosol	48.7	49.87
KRH53327	Soybean	cytosol	47.15	49.73
Zm00001d034898_P001	Maize	plastid	51.81	49.51
Bra014019.1-P	Field mustard	cytosol	45.08	48.74
KRH64596	Soybean	cytosol	47.15	48.15
CDY71240	Canola	cytosol, peroxisome, plastid	33.16	47.94
Solyc11g013360.1.1	Tomato	cytosol	41.71	46.67
AT1G44090.1	Thale cress	mitochondrion	45.08	45.19
Zm00001d007894_P001	Maize	cytosol	46.11	45.18
VIT_04s0044g01520.t01	Wine grape	cytosol	43.01	44.27
CDY70184	Canola	cytosol	34.97	41.41
CDY36334	Canola	cytosol	11.4	36.07
Zm00001d033327_P001	Maize	cytosol	27.2	34.09
Zm00001d013725_P002	Maize	cytosol	24.09	25.07

Protein Annotations

EntrezGene:107521947	MapMan:11.6.1.5	Gene3D:2.60.120.330	UniProt:A0A1D6N5E5	InterPro:DIOX_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872
GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	ProteinID:ONM35853.1	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF129
SUPFAM:SSF51197	UniParc:UPI000221B4E1	EnsemblPlantsGene:Zm00001d042611	EnsemblPlants:Zm00001d042611_P001	EnsemblPlants:Zm00001d042611_T001	SEG:seg

Description

gibberellin 20-oxidase3 gibberellin 20-oxidase3

Coordinates

chr3:-:173559174..173562022

Molecular Weight (calculated)

42512.6 Da

IEP (calculated)

6.978

GRAVY (calculated)

-0.270

Length

386 amino acids

Sequence
(BLAST)

001: MDASPTPPLP LRAPTPSIDL PAGKDRADAA ANKAAAVFDL RREPKIPEPF LWPHEEARPT SAAELEVPVV DVGVLRNGDG AGLRRAAAQV AAACATHGFF
101: QVCGHGVDAA LGRAALDGAS DFFRLPLAEK QRARRVPGTV SGYTSAHADR FASKLPWKET LSFGFHDGAA APVVVDYFTG TLGQDFEPVG RVYQRYCEEM
201: KELSLTIMEL LELSLGVERG YYREFFEDSR SIMRCNYYPP CPVPERTLGT GPHCDPTALT ILLQDDVGGL EVLVDGEWRP VRPVPGAMVI NIGDTFMALS
301: NGRYKSCLHR AVVNRRQERQ SLAFFLCPRE DRVVRPPASA APRQYPDFTW ADLMRFTQRH YRADTRTLDA FTRWLSHGPA AAAPCT

Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)

001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI

Arabidopsis Description

GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.