Factsheet for TraesCS3D01G401400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G090980.3	Barley	plastid	91.97	96.86
TraesCS3B01G439900.1	Wheat	plastid	92.66	95.96
TraesCS3A01G406200.1	Wheat	plastid	97.02	95.7
Zm00001d042611_P001	Maize	cytosol	73.39	82.9
Os01t0883800-02	Rice	cytosol	72.02	80.72
OQU87995	Sorghum	plastid	77.98	76.92
Zm00001d012212_P001	Maize	plastid	76.61	72.14
TraesCS1D01G263700.1	Wheat	cytosol	60.09	63.59
GSMUA_Achr6P25910_001	Banana	cytosol	43.81	60.63
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	45.18	60.43
GSMUA_Achr4P16380_001	Banana	cytosol	52.75	60.37
GSMUA_Achr8P32560_001	Banana	cytosol, nucleus, peroxisome	44.72	59.82
VIT_18s0001g01390.t01	Wine grape	cytosol	45.87	52.91
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	43.58	52.63
GSMUA_Achr11P...	Banana	cytosol	44.95	51.99
KRH64020	Soybean	cytosol	46.1	51.28
KRH53918	Soybean	cytosol, nucleus, peroxisome	44.5	51.19
TraesCS3D01G393900.1	Wheat	cytosol	41.51	50.84
VIT_04s0044g01650.t01	Wine grape	cytosol	43.35	50.13
KRH16465	Soybean	cytosol, nucleus, peroxisome	43.12	50.0
KRH18058	Soybean	cytosol	42.89	49.87
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	40.83	49.58
KRH53327	Soybean	cytosol	41.51	49.45
Bra014019.1-P	Field mustard	cytosol	39.91	48.74
KRH64596	Soybean	cytosol	41.28	47.62
Solyc11g013360.1.1	Tomato	cytosol	37.16	46.96
CDY71240	Canola	cytosol, peroxisome, plastid	28.67	46.82
AT1G44090.1	Thale cress	mitochondrion	40.37	45.71
VIT_04s0044g01520.t01	Wine grape	cytosol	36.7	42.67
CDY70184	Canola	cytosol	30.28	40.49
CDY36334	Canola	cytosol	9.4	33.61
TraesCS4D01G079900.1	Wheat	cytosol	24.77	31.03

Protein Annotations

EnsemblPlants:TraesCS3D01G401400.1	EnsemblPlantsGene:TraesCS3D01G401400	Gene3D:2.60.120.330	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:DIOX_N	InterPro:IPNS-like	InterPro:IPR005123
InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase	PANTHER:PTHR10209	PANTHER:PTHR10209:SF129	PFAM:PF03171	PFAM:PF14226
PFscan:PS51471	PRINTS:PR00682	SEG:seg	SUPFAM:SSF51197	MapMan:11.6.1.5	:

Description

No Description!

Coordinates

chr3D:-:515965881..515968953

Molecular Weight (calculated)

47681.7 Da

IEP (calculated)

8.548

GRAVY (calculated)

-0.293

Length

436 amino acids

Sequence
(BLAST)

001: MPDSSPAHSL AASSHTSHLM VLQTAQQEPS LTRPPHCSVA SARSPAAMDT SPATPLLLQP PAPSIDPFAA KAAVNKGGGA ATAVYDLRRE PKIPAPFVWP
101: HAEVRPTTAQ ELAVPVVDVG VLRNGDAAGL RRAVAQVAAA CATHGFFQVS GHGVDEALAR AALDGASGFF RLPLAEKQRA RRVPGTVSGY TSAHADRFAS
201: KLPWKETLSF GFHDRAGAAP VVVDYFTSTL GPDYEPMGRV YQEYCGKMKE LSLRIMELLE LSQGVEKRGY YREFFADSSS IMRCNYYPPC PEPERTLGTG
301: PHCDPTALTI LLQDDVGGLE VLVDGDWRPV RPVPGAMVIN IGDTFMALSN GRYKSCLHRA VVNRRQERRS LAFFLCPRED RVVRPPPGLR SPRRYPDFTW
401: ADLMRFTQRH YRADTRTLDA FTQWFSSSSS SAQEAA

Best Arabidopsis Sequence Match ( AT1G44090.1 )
(BLAST)

001: MCIYASRQTV CPYLTPFKVK RPKSREMNSS DVNFSLLQSQ PNVPAEFFWP EKDVAPSEGD LDLPIIDLSG FLNGNEAETQ LAAKAVKKAC MAHGTFLVVN
101: HGFKSGLAEK ALEISSLFFG LSKDEKLRAY RIPGNISGYT AGHSQRFSSN LPWNETLTLA FKKGPPHVVE DFLTSRLGNH RQEIGQVFQE FCDAMNGLVM
201: DLMELLGISM GLKDRTYYRR FFEDGSGIFR CNYYPPCKQP EKALGVGPHN DPTAITVLLQ DDVVGLEVFA AGSWQTVRPR PGALVVNVGD TFMALSNGNY
301: RSCYHRAVVN KEKVRRSLVF FSCPREDKII VPPPELVEGE EASRKYPDFT WAQLQKFTQS GYRVDNTTLH NFSSWLVSNS DKKST

Arabidopsis Description

GA20OX5Gibberellin 20 oxidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q4PT02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.