Factsheet for Solyc01g108880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 22364583

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066716	Potato	cytosol	93.71	92.66
GSMUA_Achr7P08240_001	Banana	cytosol	54.86	61.15
GSMUA_Achr7P08230_001	Banana	cytosol	55.43	60.06
Os03t0618300-01	Rice	cytosol	57.43	57.1
Solyc01g108860.2.1	Tomato	cytosol	56.29	56.13
TraesCS4A01G234100.1	Wheat	cytosol	55.71	56.03
TraesCS4D01G079900.1	Wheat	cytosol	55.43	55.75
TraesCS4B01G081200.1	Wheat	cytosol	55.14	55.46
Zm00001d033327_P001	Maize	cytosol	48.29	54.87
OQU91363	Sorghum	cytosol	54.29	53.37
EER91221	Sorghum	cytosol	50.57	51.6
HORVU4Hr1G013840.1	Barley	cytosol	56.57	51.43
KXG38014	Sorghum	cytosol	50.29	51.01
Os08t0249900-00	Rice	cytosol, nucleus, peroxisome	36.86	48.31
Zm00001d013725_P002	Maize	cytosol	43.71	41.24
Solyc06g035530.2.1	Tomato	cytosol	30.0	28.23
Solyc01g093980.2.1	Tomato	cytosol	29.14	28.02
Solyc10g045690.1.1	Tomato	cytosol, nucleus, peroxisome	15.14	27.89
Solyc06g050110.1.1	Tomato	cytosol	28.86	27.82
Solyc03g006880.2.1	Tomato	cytosol	30.0	27.78
Solyc11g072310.1.1	Tomato	cytosol	29.71	27.44
Solyc11g013360.1.1	Tomato	cytosol	26.86	27.25
Solyc09g009110.2.1	Tomato	cytosol	28.29	26.19
Solyc12g013780.1.1	Tomato	cytosol	27.43	25.74
Solyc09g042210.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	9.43	25.38
Solyc09g018420.1.1	Tomato	cytosol	7.43	25.0
Solyc10g045770.1.1	Tomato	cytosol	7.71	24.77
Solyc10g046820.1.1	Tomato	cytosol, nucleus, peroxisome	9.71	17.26

Protein Annotations

Gene3D:2.60.120.330	MapMan:50.1.13	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	UniProt:K4B3A3	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226
PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF98	SUPFAM:SSF51197	EnsemblPlantsGene:Solyc01g108880.2
EnsemblPlants:Solyc01g108880.2.1	UniParc:UPI0002768614	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:96025834..96027379

Molecular Weight (calculated)

40673.9 Da

IEP (calculated)

5.325

GRAVY (calculated)

-0.613

Length

350 amino acids

Sequence
(BLAST)

001: MENMDESFFQ ETEHRPKQST IEAEDIPIID LSPILTSDSS EITNLVAQIG DACKKWGFFQ VINHGVPSTC RQKIERASKE FFLLPTEEKR KVSRDEDNPM
101: GFYDTEHTKN VRDWKEVFDF VVENPTLLPA SHEPHDTELR ELKNQWPDFP NNFREACEEY ARGIEKLSYK LLELIALSLG LSSKRLNNYF KDQTSFMRLN
201: YYPLCPIHHL ALGVGRHKDP GALTVLAQDD VGGLEVKRKA DGEWIQVKPT PDAYIINVGD IIQVWSNDRY ESVEHRVIAS SNKERFSVPF FFNPSHYVMV
301: EPLEELTNEE SPAKYKAYNW GKFFTTRNLS NFKKLNVENI QIYHFRNGDL

Best Arabidopsis Sequence Match ( AT3G19000.1 )
(BLAST)

001: MGELDEAFIQ APEHRPNTHL TNSGDFIFSD EIPTIDLSSL EDTHHDKTAI AKEIAEACKR WGFFQVINHG LPSALRHRVE KTAAEFFNLT TEEKRKVKRD
101: EVNPMGYHDE EHTKNVRDWK EIFDFFLQDS TIVPASPEPE DTELRKLTNQ WPQNPSHFRE VCQEYAREVE KLAFRLLELV SISLGLPGDR LTGFFNEQTS
201: FLRFNHYPPC PNPELALGVG RHKDGGALTV LAQDSVGGLQ VSRRSDGQWI PVKPISDALI INMGNCIQVW TNDEYWSAEH RVVVNTSKER FSIPFFFFPS
301: HEANIEPLEE LISEENPPCY KKYNWGKFFV SRNRSDFKKL EVENIQIDHF KA

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LJ66]
SUBAcon: [peroxisome,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.