Factsheet for TraesCS1A01G413000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

golgi: 23128297
golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G443100.1	Wheat	cytosol	100.0	100.0
TraesCS1D01G420600.2	Wheat	cytosol	100.0	100.0
EES19986	Sorghum	cytosol	98.19	98.19
Os05t0574500-01	Rice	nucleus	98.19	98.19
TraesCS7A01G032900.1	Wheat	cytosol	13.57	8.67
TraesCS1A01G406200.1	Wheat	plasma membrane	19.46	8.24
TraesCS1A01G413400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	19.0	8.08
TraesCS6A01G415500.2	Wheat	mitochondrion	18.1	7.92
TraesCS4A01G303900.1	Wheat	plasma membrane	17.19	7.72
TraesCS6A01G073300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	17.65	7.68
TraesCS4A01G065300.1	Wheat	mitochondrion, plasma membrane	16.74	7.46
TraesCS7A01G372300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	17.65	7.41
TraesCS1A01G369100.1	Wheat	golgi	16.74	7.34
TraesCS4A01G025300.1	Wheat	golgi	16.74	7.27
TraesCS1A01G392800.1	Wheat	plasma membrane	14.93	7.1
CDY49219	Canola	endoplasmic reticulum, plasma membrane	14.48	7.06
TraesCS6A01G293700.1	Wheat	golgi, plasma membrane	15.38	7.02
TraesCS6A01G177700.1	Wheat	plastid	18.1	6.98
TraesCS1A01G037600.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	15.38	6.97
TraesCS7A01G108300.1	Wheat	plasma membrane	14.03	6.92
TraesCS7A01G532300.1	Wheat	golgi	14.93	6.89
TraesCS4A01G456600.1	Wheat	plasma membrane	14.03	6.84
TraesCS4A01G164400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	15.84	6.84
TraesCS4A01G031500.1	Wheat	plasma membrane	14.93	6.83
TraesCS6A01G024400.1	Wheat	plasma membrane	14.93	6.75
TraesCS3A01G451100.1	Wheat	plasma membrane	14.93	6.75
TraesCS7A01G205700.1	Wheat	golgi	14.93	6.72
TraesCS3A01G279400.1	Wheat	plasma membrane	14.48	6.54
TraesCS4A01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	15.84	6.48
TraesCS4A01G068400.1	Wheat	peroxisome	15.84	6.47
TraesCS2A01G014600.1	Wheat	plasma membrane	14.48	6.45
TraesCS7A01G205800.1	Wheat	endoplasmic reticulum, golgi, vacuole	13.12	6.44
TraesCS5A01G076500.1	Wheat	golgi	14.03	6.31
TraesCS7A01G107900.1	Wheat	golgi, mitochondrion	13.57	6.29
TraesCS6A01G025200.1	Wheat	plasma membrane	13.57	6.16
TraesCS7A01G206000.1	Wheat	golgi	13.57	6.09
TraesCS7A01G108000.1	Wheat	golgi, plasma membrane, plastid	13.12	6.04
TraesCS1A01G040900.1	Wheat	golgi	12.67	5.86
TraesCS6A01G341400.1	Wheat	golgi	13.12	5.77
TraesCS2A01G507700.1	Wheat	golgi, plasma membrane	11.76	5.68
TraesCS1A01G439000.1	Wheat	plasma membrane	12.22	5.4
TraesCS7A01G107700.1	Wheat	mitochondrion, plastid	11.31	5.03
TraesCS7A01G532200.1	Wheat	cytosol	0.0	0.0
CDY49218	Canola	plasma membrane	0.0	0.0

Protein Annotations

MapMan:23.5.1.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150	GO:GO:0016787
InterPro:IPR002041	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00627	PFscan:PS51418	PANTHER:PTHR24071
PANTHER:PTHR24071:SF8	InterPro:Ran_GTPase	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS1A01G413000	EnsemblPlants:TraesCS1A01G413000.1
TIGR:cd00877	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:573068428..573070593

Molecular Weight (calculated)

25135.0 Da

IEP (calculated)

7.148

GRAVY (calculated)

-0.401

Length

221 amino acids

Sequence
(BLAST)

001: MALPNQNTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFTTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTSRLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDPNIHFV EAVALKPPEV TFDLAMQQQH
201: EAELAAAAAQ PLPDDDDDLI E

Best Arabidopsis Sequence Match ( AT5G55190.1 )
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E

Arabidopsis Description

RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.