Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G01120.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT1G01120.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT1G01120.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G226100.1 | Wheat | peroxisome | 97.78 | 98.14 |
| TraesCS4B01G225500.1 | Wheat | peroxisome | 97.78 | 96.89 |
| HORVU4Hr1G063420.1 | Barley | peroxisome | 96.67 | 95.96 |
| Os03t0245700-02 | Rice | cytosol, peroxisome, plastid | 88.17 | 89.66 |
| Zm00001d028406_P001 | Maize | peroxisome | 87.25 | 86.29 |
| KXG39781 | Sorghum | peroxisome | 86.88 | 85.61 |
| Zm00001d047931_P001 | Maize | peroxisome | 84.47 | 83.7 |
| GSMUA_Achr1P02540_001 | Banana | cytosol | 58.78 | 75.0 |
| CDY15199 | Canola | cytosol | 44.18 | 70.29 |
| Solyc10g009240.2.1 | Tomato | peroxisome | 60.63 | 62.0 |
| VIT_15s0048g02720.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 60.63 | 61.89 |
| AT1G01120.1 | Thale cress | plasma membrane | 59.7 | 61.17 |
| PGSC0003DMT400028047 | Potato | plasma membrane | 60.44 | 61.12 |
| Bra032621.1-P | Field mustard | plasma membrane | 54.71 | 60.29 |
| KRH68953 | Soybean | cytosol, golgi, nucleus | 58.78 | 60.0 |
| CDY37475 | Canola | plasma membrane | 52.13 | 59.0 |
| CDY32443 | Canola | plasma membrane | 52.13 | 59.0 |
| CDX90012 | Canola | cytosol | 57.3 | 58.6 |
| TraesCS1A01G413400.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 54.34 | 56.54 |
| TraesCS7A01G372300.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 54.53 | 56.08 |
| TraesCS1A01G406200.1 | Wheat | plasma membrane | 52.68 | 54.6 |
| TraesCS6A01G073300.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 51.02 | 54.33 |
| AT2G46720.1 | Thale cress | endoplasmic reticulum, plasma membrane | 46.77 | 54.29 |
| AT3G10280.1 | Thale cress | endoplasmic reticulum, plasma membrane | 45.66 | 53.81 |
| TraesCS4A01G065300.1 | Wheat | mitochondrion, plasma membrane | 49.17 | 53.63 |
| TraesCS4A01G164400.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 50.28 | 53.12 |
| TraesCS7A01G032900.1 | Wheat | cytosol | 32.9 | 51.45 |
| TraesCS6A01G177700.1 | Wheat | plastid | 53.23 | 50.26 |
| TraesCS4A01G025300.1 | Wheat | golgi | 46.77 | 49.71 |
| TraesCS4A01G007400.1 | Wheat | cytosol, peroxisome, plasma membrane | 49.54 | 49.63 |
| TraesCS1A01G392800.1 | Wheat | plasma membrane | 41.77 | 48.6 |
| TraesCS6A01G415500.2 | Wheat | mitochondrion | 45.1 | 48.32 |
| TraesCS1A01G369100.1 | Wheat | golgi | 44.18 | 47.42 |
| TraesCS7A01G205700.1 | Wheat | golgi | 42.7 | 47.05 |
| TraesCS6A01G293700.1 | Wheat | golgi, plasma membrane | 41.77 | 46.69 |
| TraesCS7A01G108300.1 | Wheat | plasma membrane | 38.63 | 46.65 |
| TraesCS7A01G205800.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 38.63 | 46.44 |
| TraesCS4A01G456600.1 | Wheat | plasma membrane | 38.45 | 45.92 |
| TraesCS4A01G031500.1 | Wheat | plasma membrane | 39.93 | 44.72 |
| TraesCS6A01G024400.1 | Wheat | plasma membrane | 40.11 | 44.38 |
| TraesCS7A01G532300.1 | Wheat | golgi | 39.0 | 44.05 |
| TraesCS3A01G451100.1 | Wheat | plasma membrane | 39.37 | 43.56 |
| TraesCS6A01G341400.1 | Wheat | golgi | 40.48 | 43.54 |
| TraesCS2A01G507700.1 | Wheat | golgi, plasma membrane | 36.78 | 43.45 |
| TraesCS4A01G303900.1 | Wheat | plasma membrane | 39.19 | 43.09 |
| TraesCS1A01G037600.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 38.82 | 43.03 |
| TraesCS2A01G014600.1 | Wheat | plasma membrane | 39.37 | 42.94 |
| TraesCS1A01G040900.1 | Wheat | golgi | 37.71 | 42.68 |
| TraesCS3A01G279400.1 | Wheat | plasma membrane | 38.26 | 42.33 |
| TraesCS7A01G206000.1 | Wheat | golgi | 38.26 | 41.99 |
| TraesCS6A01G025200.1 | Wheat | plasma membrane | 36.97 | 41.07 |
| TraesCS5A01G076500.1 | Wheat | golgi | 37.15 | 40.94 |
| CDY41551 | Canola | golgi | 47.5 | 40.86 |
| TraesCS7A01G108000.1 | Wheat | golgi, plasma membrane, plastid | 36.23 | 40.83 |
| TraesCS7A01G107700.1 | Wheat | mitochondrion, plastid | 37.15 | 40.44 |
| CDX80041 | Canola | endoplasmic reticulum, golgi, plasma membrane | 47.5 | 40.35 |
| TraesCS7A01G107900.1 | Wheat | golgi, mitochondrion | 34.75 | 39.41 |
| TraesCS1A01G439000.1 | Wheat | plasma membrane | 34.38 | 37.2 |
| TraesCS7A01G532200.1 | Wheat | cytosol | 6.47 | 33.65 |
| TraesCS1A01G413000.1 | Wheat | golgi | 6.47 | 15.84 |
Protein Annotations
| KEGG:00061+2.3.1.180 | KEGG:00062+2.3.1.199 | InterPro:3-ktacl-CoA_syn | Gene3D:3.40.47.10 | MapMan:5.1.6.1.1 | InterPro:ACP_syn_III_C |
| InterPro:FAE1_typ3_polyketide_synth | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006629 | GO:GO:0006633 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 |
| GO:GO:0016747 | InterPro:IPR016039 | PFAM:PF08392 | PFAM:PF08541 | PIRSF:PIRSF036417 | PANTHER:PTHR31561 |
| PANTHER:PTHR31561:SF67 | SUPFAM:SSF53901 | TMHMM:TMhelix | InterPro:Thiolase-like | EnsemblPlantsGene:TraesCS4A01G068400 | EnsemblPlants:TraesCS4A01G068400.1 |
| TIGR:cd00831 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:66909705..66911330
Molecular Weight (calculated)
60126.9 Da
IEP (calculated)
8.918
GRAVY (calculated)
-0.067
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MESAPAAAFM ERERLTAEVT FSGDAQAAAS SEGAERLPTS IIIKIRRRLP DFARSVNLKY VRLGLRHGGS LTSYLPMLCV PVLAAAAYSF VRLDVIYLSI
101: DLLSCVAWLG TAMLLLTVYY FKRPRPVYLV EFACYKPEDQ NKITKEAFLD MTESTGCFND ETLAFQTKIT TRSALGDETY LPPGVQARPP RLNMAEARLE
201: AEAVMFGCLD ALFESTGIDP RRDVRILIVN CSLFNPTPSL ASMIIHHYKM REDVKSFNLG GMGCSAGLIA IDLAKDMLQA NPNAYAVVLS TENITLNWYF
301: GNDRSMLLSN CIFRMGGAAA LLSNRRADAG RAKYRLLHTV RTHKGATDEC FKCVYQREDD VGKVGVSLAR ELMTVAGDAL KTNITTLGPL VLPLSEQLKF
401: LKSLMMRRVF RAKGVRPYIP NFRRAFEHFC VHAGGRAVLE EVQRSLSLED KDMEPSRCAL HRFGNTSSSS LWYELAYAEA KGRVKRGNRV WQIGFGSGFK
501: CNSAVWRALH DVPAVSPPGP EEKACNPWAD CVAKYPPKAY V
101: DLLSCVAWLG TAMLLLTVYY FKRPRPVYLV EFACYKPEDQ NKITKEAFLD MTESTGCFND ETLAFQTKIT TRSALGDETY LPPGVQARPP RLNMAEARLE
201: AEAVMFGCLD ALFESTGIDP RRDVRILIVN CSLFNPTPSL ASMIIHHYKM REDVKSFNLG GMGCSAGLIA IDLAKDMLQA NPNAYAVVLS TENITLNWYF
301: GNDRSMLLSN CIFRMGGAAA LLSNRRADAG RAKYRLLHTV RTHKGATDEC FKCVYQREDD VGKVGVSLAR ELMTVAGDAL KTNITTLGPL VLPLSEQLKF
401: LKSLMMRRVF RAKGVRPYIP NFRRAFEHFC VHAGGRAVLE EVQRSLSLED KDMEPSRCAL HRFGNTSSSS LWYELAYAEA KGRVKRGNRV WQIGFGSGFK
501: CNSAVWRALH DVPAVSPPGP EEKACNPWAD CVAKYPPKAY V
001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ
Arabidopsis Description
KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.