Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G01120.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT1G01120.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15199 | Canola | cytosol | 64.08 | 99.71 |
| CDY37475 | Canola | plasma membrane | 83.36 | 92.26 |
| CDY32443 | Canola | plasma membrane | 82.99 | 91.84 |
| AT1G01120.1 | Thale cress | plasma membrane | 91.49 | 91.67 |
| CDX94721 | Canola | cytosol | 50.66 | 67.68 |
| CDX89699 | Canola | cytosol | 39.89 | 64.92 |
| CDY63070 | Canola | cytosol | 44.8 | 64.4 |
| GSMUA_Achr1P02540_001 | Banana | cytosol | 49.91 | 62.26 |
| CDX70186 | Canola | plastid | 58.22 | 60.04 |
| CDY10355 | Canola | cytosol | 29.11 | 59.69 |
| CDX98800 | Canola | plastid | 58.22 | 59.46 |
| Os03t0245700-02 | Rice | cytosol, peroxisome, plastid | 59.74 | 59.4 |
| CDX89834 | Canola | plasma membrane | 57.66 | 58.54 |
| CDY14892 | Canola | endoplasmic reticulum, golgi, plastid | 58.03 | 58.37 |
| CDX96912 | Canola | endoplasmic reticulum, golgi, plastid | 57.84 | 58.06 |
| CDY18212 | Canola | plasma membrane | 58.03 | 58.03 |
| CDY29431 | Canola | plasma membrane | 52.93 | 57.85 |
| Zm00001d030343_P001 | Maize | cytosol, peroxisome, plasma membrane | 58.22 | 57.57 |
| EER91722 | Sorghum | peroxisome | 58.03 | 57.38 |
| TraesCS4D01G226100.1 | Wheat | peroxisome | 58.41 | 57.33 |
| TraesCS4A01G068400.1 | Wheat | peroxisome | 58.6 | 57.3 |
| HORVU4Hr1G063420.1 | Barley | peroxisome | 58.98 | 57.25 |
| Zm00001d028406_P001 | Maize | peroxisome | 58.98 | 57.04 |
| TraesCS4B01G225500.1 | Wheat | peroxisome | 58.41 | 56.59 |
| Zm00001d047931_P001 | Maize | peroxisome | 58.22 | 56.41 |
| KXG39781 | Sorghum | peroxisome | 58.41 | 56.28 |
| CDY26665 | Canola | cytosol, peroxisome, plasma membrane | 52.55 | 56.16 |
| CDY04232 | Canola | plasma membrane | 52.74 | 56.14 |
| CDX76286 | Canola | golgi | 50.28 | 56.12 |
| CDY47457 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 41.21 | 56.04 |
| CDY47458 | Canola | cytosol | 5.29 | 56.0 |
| CDY07381 | Canola | plasma membrane | 52.55 | 55.94 |
| CDY21665 | Canola | plasma membrane | 53.88 | 55.88 |
| CDY46243 | Canola | golgi | 49.91 | 55.7 |
| CDX81929 | Canola | plasma membrane | 53.69 | 55.69 |
| CDX71278 | Canola | cytosol, peroxisome, plasma membrane | 52.74 | 55.03 |
| CDY46211 | Canola | cytosol, peroxisome, plasma membrane | 52.74 | 55.03 |
| CDY42109 | Canola | plasma membrane | 50.85 | 54.12 |
| CDX71202 | Canola | endoplasmic reticulum, golgi, plasma membrane | 48.02 | 53.25 |
| CDX69040 | Canola | cytosol, endoplasmic reticulum, plasma membrane, plastid | 45.56 | 51.94 |
| CDX89700 | Canola | endoplasmic reticulum, golgi, plasma membrane | 41.97 | 51.51 |
| CDY17465 | Canola | plasma membrane | 46.12 | 51.37 |
| CDX75415 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 44.8 | 51.08 |
| CDY49290 | Canola | endoplasmic reticulum, golgi | 40.64 | 50.83 |
| CDX72475 | Canola | endoplasmic reticulum, golgi | 40.45 | 50.59 |
| CDY02266 | Canola | endoplasmic reticulum, golgi, plasma membrane | 42.53 | 50.56 |
| CDX76287 | Canola | endoplasmic reticulum, golgi, plasma membrane | 47.45 | 49.6 |
| CDY26762 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 44.05 | 49.36 |
| CDX77038 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 49.15 | 48.87 |
| CDY11498 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 50.28 | 48.54 |
| CDY37951 | Canola | endoplasmic reticulum, plasma membrane | 40.83 | 48.11 |
| CDX76724 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 49.72 | 48.08 |
| CDY35309 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 49.72 | 47.91 |
| CDY66107 | Canola | endoplasmic reticulum, plasma membrane, plastid | 40.64 | 47.88 |
| CDX68323 | Canola | endoplasmic reticulum, golgi | 40.64 | 47.67 |
| CDY49219 | Canola | endoplasmic reticulum, plasma membrane | 40.45 | 47.24 |
| CDY33931 | Canola | plastid | 39.32 | 45.51 |
| CDY05644 | Canola | plasma membrane, plastid, vacuole | 38.75 | 44.86 |
| CDY41551 | Canola | golgi | 52.74 | 44.36 |
| CDX80041 | Canola | endoplasmic reticulum, golgi, plasma membrane | 52.93 | 43.96 |
| CDY49218 | Canola | plasma membrane | 0.57 | 1.05 |
Protein Annotations
| KEGG:00061+2.3.1.180 | KEGG:00062+2.3.1.199 | KEGG:00650+2.3.1.19 | InterPro:3-ktacl-CoA_syn | Gene3D:3.40.47.10 | MapMan:5.1.6.1.1 |
| GO:A0A078DM85 | InterPro:ACP_syn_III_C | EnsemblPlants:CDX90012 | ProteinID:CDX90012 | ProteinID:CDX90012.1 | InterPro:FAE1_typ3_polyketide_synth |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006629 | GO:GO:0006633 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 |
| GO:GO:0016746 | GO:GO:0016747 | EnsemblPlantsGene:GSBRNA2T00150511001 | InterPro:IPR016039 | PFAM:PF08392 | PFAM:PF08541 |
| PIRSF:PIRSF036417 | PANTHER:PTHR31561 | PANTHER:PTHR31561:SF65 | MetaCyc:PWY-4381 | MetaCyc:PWY-5080 | MetaCyc:PWY-5972 |
| MetaCyc:PWY-6433 | MetaCyc:PWY-6598 | MetaCyc:PWY-7036 | MetaCyc:PWY-7601 | MetaCyc:PWY-7602 | MetaCyc:PWY-7619 |
| MetaCyc:PWY-7724 | MetaCyc:PWY-7725 | SUPFAM:SSF53901 | TMHMM:TMhelix | InterPro:Thiolase-like | UniPathway:UPA00094 |
| UniParc:UPI0004EE9C7E | SEG:seg | : | : | : | : |
Description
BnaA10g00700D
Coordinates
chrLK031861:-:1250057..1251912
Molecular Weight (calculated)
59331.9 Da
IEP (calculated)
8.395
GRAVY (calculated)
-0.103
Length
529 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEKTNSIEM DQERLTAEMA FQDSSPAIIR IQRHLPDLLT SVKLKYVKLG LHNSCNFTTF LFFLIILPLT GTVLVQLTGL TLDMLSELWS NRVLQLDGST
101: RLTCSVFLCF ALTLYVTNRS KPVYLVDFSC YKPEDERKMS VNSFLKMTEE NGAFTDDTVQ FQQRISNRAG LGDETYFPRG ITSTPPKLNM SEARAEAEAV
201: MFGALDSLFE KTGIKPAEIG ILIVNCSLFS PTPSLSAMIV NRYKMREDIK SYNLGGMGCS AGLISIELAN NLLKANPNSC AVVVSTENIT LNWYFGNDRS
301: MLLCNCIFRM GGAAILLSNR RQDRSKSKYE LVNVVRTHKG SDDKNYNCVY QKEDERGTIG VSLSKELMSV AGDALKTNIT TLGPMVLPLS EQLMFLISLV
401: KRKLFKLKVK PYIPDFKLAF EHFCIHAGGR AVLDEVQKNL DLKDWHMEPS RMTLHRFGNT SSSSLWYEMA YTEAKGRVKT GDRLWQIAFG SGFKCNSAVW
501: KALRAVSTEE LTGNAWAGSV EDYPVKIVQ
101: RLTCSVFLCF ALTLYVTNRS KPVYLVDFSC YKPEDERKMS VNSFLKMTEE NGAFTDDTVQ FQQRISNRAG LGDETYFPRG ITSTPPKLNM SEARAEAEAV
201: MFGALDSLFE KTGIKPAEIG ILIVNCSLFS PTPSLSAMIV NRYKMREDIK SYNLGGMGCS AGLISIELAN NLLKANPNSC AVVVSTENIT LNWYFGNDRS
301: MLLCNCIFRM GGAAILLSNR RQDRSKSKYE LVNVVRTHKG SDDKNYNCVY QKEDERGTIG VSLSKELMSV AGDALKTNIT TLGPMVLPLS EQLMFLISLV
401: KRKLFKLKVK PYIPDFKLAF EHFCIHAGGR AVLDEVQKNL DLKDWHMEPS RMTLHRFGNT SSSSLWYEMA YTEAKGRVKT GDRLWQIAFG SGFKCNSAVW
501: KALRAVSTEE LTGNAWAGSV EDYPVKIVQ
001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ
Arabidopsis Description
KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.