CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69040	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	97.41	97.41
CDX72475	Canola	endoplasmic reticulum, golgi	77.59	85.11
CDY49290	Canola	endoplasmic reticulum, golgi	77.16	84.63
AT4G34250.1	Thale cress	endoplasmic reticulum, golgi	83.19	78.3
CDY10355	Canola	cytosol	41.59	74.81
CDX71202	Canola	endoplasmic reticulum, golgi, plasma membrane	76.29	74.21
CDY47458	Canola	cytosol	7.54	70.0
CDX89699	Canola	cytosol	48.71	69.54
KRH51526	Soybean	plasma membrane	59.91	62.75
CDX94721	Canola	cytosol	53.02	62.12
CDX89700	Canola	endoplasmic reticulum, golgi, plasma membrane	56.68	61.02
CDY47457	Canola	cytosol, endoplasmic reticulum, plasma membrane	50.43	60.15
CDY02266	Canola	endoplasmic reticulum, golgi, plasma membrane	57.54	60.0
CDY15199	Canola	cytosol	43.75	59.71
CDY17465	Canola	plasma membrane	60.78	59.37
CDX76286	Canola	golgi	60.56	59.28
CDY46243	Canola	golgi	60.56	59.28
CDY63070	Canola	cytosol	46.55	58.7
VIT_03s0063g02640.t01	Wine grape	plasma membrane	63.15	58.13
CDX76287	Canola	endoplasmic reticulum, golgi, plasma membrane	62.93	57.71
CDX71278	Canola	cytosol, peroxisome, plasma membrane	61.85	56.61
CDY46211	Canola	cytosol, peroxisome, plasma membrane	61.64	56.41
CDY21665	Canola	plasma membrane	61.42	55.88
Zm00001d009608_P001	Maize	plasma membrane	60.78	55.84
Os05t0568000-02	Rice	plasma membrane	61.85	55.84
Zm00001d039053_P001	Maize	plasma membrane	61.64	55.64
CDY29431	Canola	plasma membrane	57.97	55.58
CDX81929	Canola	plasma membrane	60.99	55.49
GSMUA_Achr2P08980_001	Banana	golgi, peroxisome, plasma membrane	55.17	55.41
GSMUA_Achr6P27270_001	Banana	cytosol, peroxisome, plasma membrane	50.22	55.21
EES19964	Sorghum	endoplasmic reticulum, plasma membrane, plastid	61.42	54.81
CDY26665	Canola	cytosol, peroxisome, plasma membrane	58.41	54.75
TraesCS1B01G436300.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	61.21	54.1
TraesCS1A01G406200.1	Wheat	plasma membrane	60.78	54.02
TraesCS1D01G414600.1	Wheat	peroxisome	60.99	53.9
GSMUA_Achr9P06980_001	Banana	cytosol, golgi, peroxisome	54.31	53.5
GSMUA_Achr5P09090_001	Banana	golgi, peroxisome, plasma membrane	48.28	53.46
CDX70186	Canola	plastid	57.11	51.66
CDY14892	Canola	endoplasmic reticulum, golgi, plastid	58.41	51.52
CDX96912	Canola	endoplasmic reticulum, golgi, plastid	58.19	51.23
CDX98800	Canola	plastid	57.11	51.16
CDY26762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	51.72	50.85
CDX89834	Canola	plasma membrane	56.9	50.67
CDY18212	Canola	plasma membrane	56.47	49.53
CDY04232	Canola	plasma membrane	52.16	48.69
CDY07381	Canola	plasma membrane	52.16	48.69
HORVU1Hr1G089710.3	Barley	plastid	61.21	48.22
CDY42109	Canola	plasma membrane	51.51	48.09
CDY37475	Canola	plasma membrane	46.34	44.98
CDX90012	Canola	cytosol	51.08	44.8
CDY32443	Canola	plasma membrane	46.12	44.77
CDY37951	Canola	endoplasmic reticulum, plasma membrane	43.32	44.77
CDY66107	Canola	endoplasmic reticulum, plasma membrane, plastid	43.32	44.77
CDY49219	Canola	endoplasmic reticulum, plasma membrane	43.53	44.59
CDX68323	Canola	endoplasmic reticulum, golgi	42.67	43.9
CDY33931	Canola	plastid	41.38	42.01
CDY05644	Canola	plasma membrane, plastid, vacuole	41.38	42.01
CDX77038	Canola	cytosol, endoplasmic reticulum, plasma membrane	46.98	40.98
CDY11498	Canola	endoplasmic reticulum, peroxisome, plasma membrane	48.28	40.88
CDX76724	Canola	cytosol, endoplasmic reticulum, plasma membrane	48.06	40.77
CDY35309	Canola	cytosol, endoplasmic reticulum, plasma membrane	47.63	40.26
CDY41551	Canola	golgi	50.22	37.04
CDX80041	Canola	endoplasmic reticulum, golgi, plasma membrane	50.65	36.89
CDY49218	Canola	plasma membrane	0.0	0.0

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	KEGG:00650+2.3.1.19	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1
GO:A0A078CEV4	InterPro:ACP_syn_III_C	EnsemblPlants:CDX75415	ProteinID:CDX75415	ProteinID:CDX75415.1	InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0016746
GO:GO:0016747	EnsemblPlantsGene:GSBRNA2T00121302001	InterPro:IPR016039	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF23	MetaCyc:PWY-4381	MetaCyc:PWY-5080	MetaCyc:PWY-5972	MetaCyc:PWY-6433
MetaCyc:PWY-6598	MetaCyc:PWY-7036	MetaCyc:PWY-7601	MetaCyc:PWY-7602	MetaCyc:PWY-7619	MetaCyc:PWY-7724
MetaCyc:PWY-7725	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniPathway:UPA00094	UniParc:UPI0004EEADBE
SEG:seg	:	:	:	:	:

Description

BnaA01g02870D

Coordinates

chrLK031804:+:1008420..1009814

Molecular Weight (calculated)

52056.5 Da

IEP (calculated)

9.508

GRAVY (calculated)

-0.065

Length

464 amino acids

Sequence
(BLAST)

001: MSAIAMKASR LSTQDLHSFY LYLEKNHTSL TMFTISLILG WILYIMNRPQ TVYLVDFSCY LPPSHLKVSV KKIMSHVRVI REQGMWAKTG EHDYLMDFVE
101: KILERSGLGQ ETYIPEGLHC LPLEQTMAGS RKETTDVILG AVDNVLRNTG VSPSDIGILV VNSSTFNPTP SLATIIVNKY KLRDNIKSLN LGGMGCSAGV
201: IAIDVAKSLL QVHRNTYALV VSTENITQNL YLGNNKSMLV TNCLFRVGGA AVLLSNMSKD QKRAKYKLVH TVRVHTGSDD RSYGCALQED DEDGLVGVSL
301: SKDLPMVAAR TLKINIATLG PLVLPIREKL RFFVTFVRKK FFNPKIKHYM PDFKLAFEHF CIHAGGRALI DELEKNLHLS PLHVEASRMT LHRFGNTSSS
401: SIWYELAYTE AKGRMKKGDR IWQIALGSGF KCNSSVWVAL RNVKPSANNP WEDCLHKYPV EIDI

Best Arabidopsis Sequence Match ( AT4G34250.1 )
(BLAST)

001: MDYPMKKVKI FFNYLMAHRF KLCFLPLMVA IAVEASRLST QDLQNFYLYL QNNHTSLTMF FLYLALGSTL YLMTRPKPVY LVDFSCYLPP SHLKASTQRI
101: MQHVRLVREA GAWKQESDYL MDFCEKILER SGLGQETYVP EGLQTLPLQQ NLAVSRIETE EVIIGAVDNL FRNTGISPSD IGILVVNSST FNPTPSLSSI
201: LVNKFKLRDN IKSLNLGGMG CSAGVIAIDA AKSLLQVHRN TYALVVSTEN ITQNLYMGNN KSMLVTNCLF RIGGAAILLS NRSIDRKRAK YELVHTVRVH
301: TGADDRSYEC ATQEEDEDGI VGVSLSKNLP MVAARTLKIN IATLGPLVLP ISEKFHFFVR FVKKKFLNPK LKHYIPDFKL AFEHFCIHAG GRALIDEMEK
401: NLHLTPLDVE ASRMTLHRFG NTSSSSIWYE LAYTEAKGRM TKGDRIWQIA LGSGFKCNSS VWVALRNVKP STNNPWEQCL HKYPVEIDID LKE

Arabidopsis Description

KCS163-ketoacyl-CoA synthase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ0]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.