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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY29431 Canola plasma membrane 95.15 97.31
AT1G19440.1 Thale cress golgi, peroxisome, plasma membrane 94.34 90.5
CDY21665 Canola plasma membrane 91.31 88.63
CDX81929 Canola plasma membrane 91.31 88.63
CDY47457 Canola cytosol, endoplasmic reticulum, plasma membrane 61.82 78.66
CDX89699 Canola cytosol 51.52 78.46
Solyc04g080450.1.1 Tomato golgi, peroxisome, plasma membrane 81.41 77.95
PGSC0003DMT400009451 Potato cytosol, peroxisome, plasma membrane 81.62 77.84
KRH15203 Soybean plasma membrane 78.99 76.67
KRH05829 Soybean cytosol, peroxisome, plasma membrane 79.39 76.61
Zm00001d009608_P001 Maize plasma membrane 75.76 74.26
CDY47458 Canola cytosol 7.47 74.0
CDX71278 Canola cytosol, peroxisome, plasma membrane 75.35 73.57
Zm00001d039053_P001 Maize plasma membrane 76.36 73.54
Os05t0568000-02 Rice plasma membrane 76.36 73.54
CDY46211 Canola cytosol, peroxisome, plasma membrane 74.95 73.18
GSMUA_Achr2P08980_001 Banana golgi, peroxisome, plasma membrane 68.28 73.16
EES19964 Sorghum endoplasmic reticulum, plasma membrane, plastid 76.36 72.69
TraesCS1A01G406200.1 Wheat plasma membrane 76.16 72.22
TraesCS1B01G436300.1 Wheat endoplasmic reticulum, plasma membrane, plastid 76.36 72.0
TraesCS1D01G414600.1 Wheat peroxisome 76.36 72.0
GSMUA_Achr6P27270_001 Banana cytosol, peroxisome, plasma membrane 59.6 69.91
CDX76286 Canola golgi 66.06 68.99
CDY26762 Canola endoplasmic reticulum, peroxisome, plasma membrane 65.66 68.86
CDY46243 Canola golgi 65.86 68.78
GSMUA_Achr9P06980_001 Banana cytosol, golgi, peroxisome 65.25 68.58
CDY10355 Canola cytosol 35.15 67.44
HORVU1Hr1G089710.3 Barley plastid 76.57 64.35
CDX94721 Canola cytosol 51.31 64.14
GSMUA_Achr5P09090_001 Banana golgi, peroxisome, plasma membrane 54.14 63.96
CDX70186 Canola plastid 65.25 62.96
CDX98800 Canola plastid 64.85 61.97
CDY15199 Canola cytosol 42.42 61.76
CDY02266 Canola endoplasmic reticulum, golgi, plasma membrane 54.95 61.12
CDX89700 Canola endoplasmic reticulum, golgi, plasma membrane 53.13 61.02
CDY63070 Canola cytosol 45.25 60.87
CDY17465 Canola plasma membrane 57.98 60.42
CDX89834 Canola plasma membrane 61.82 58.73
CDX76287 Canola endoplasmic reticulum, golgi, plasma membrane 59.8 58.5
CDX75415 Canola cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 54.75 58.41
CDX69040 Canola cytosol, endoplasmic reticulum, plasma membrane, plastid 54.55 58.19
CDY14892 Canola endoplasmic reticulum, golgi, plastid 61.82 58.17
CDY07381 Canola plasma membrane 58.38 58.15
CDX71202 Canola endoplasmic reticulum, golgi, plasma membrane 55.96 58.07
CDX96912 Canola endoplasmic reticulum, golgi, plastid 61.62 57.87
CDY18212 Canola plasma membrane 61.62 57.66
CDY04232 Canola plasma membrane 57.78 57.55
CDX72475 Canola endoplasmic reticulum, golgi 49.09 57.45
CDY49290 Canola endoplasmic reticulum, golgi 48.89 57.21
CDY42109 Canola plasma membrane 56.77 56.54
CDX90012 Canola cytosol 56.16 52.55
CDX77038 Canola cytosol, endoplasmic reticulum, plasma membrane 54.75 50.94
CDY11498 Canola endoplasmic reticulum, peroxisome, plasma membrane 55.35 50.0
CDX76724 Canola cytosol, endoplasmic reticulum, plasma membrane 54.95 49.73
CDY37475 Canola plasma membrane 47.88 49.58
CDY32443 Canola plasma membrane 47.88 49.58
CDY35309 Canola cytosol, endoplasmic reticulum, plasma membrane 54.95 49.54
CDY49219 Canola endoplasmic reticulum, plasma membrane 40.0 43.71
CDY66107 Canola endoplasmic reticulum, plasma membrane, plastid 39.6 43.65
CDY37951 Canola endoplasmic reticulum, plasma membrane 39.6 43.65
CDX68323 Canola endoplasmic reticulum, golgi 39.39 43.24
CDY33931 Canola plastid 37.78 40.92
CDY05644 Canola plasma membrane, plastid, vacuole 37.78 40.92
CDX80041 Canola endoplasmic reticulum, golgi, plasma membrane 49.09 38.15
CDY41551 Canola golgi 48.28 38.0
CDY49218 Canola plasma membrane 0.61 1.05
Protein Annotations
KEGG:00062+2.3.1.199KEGG:00650+2.3.1.19InterPro:3-ktacl-CoA_synGene3D:3.40.47.10MapMan:5.1.6.1.1GO:A0A078GJG9
UniProt:A0A078GJG9EnsemblPlants:CDY26665ProteinID:CDY26665ProteinID:CDY26665.1InterPro:Chalcone/stilbene_synth_CInterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0006629GO:GO:0006633GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016740
GO:GO:0016746GO:GO:0016747EnsemblPlantsGene:GSBRNA2T00035551001InterPro:IPR016039PFAM:PF02797PFAM:PF08392
PIRSF:PIRSF036417PANTHER:PTHR31561PANTHER:PTHR31561:SF65MetaCyc:PWY-5080MetaCyc:PWY-5972MetaCyc:PWY-6433
MetaCyc:PWY-6598MetaCyc:PWY-7036MetaCyc:PWY-7601MetaCyc:PWY-7602MetaCyc:PWY-7619MetaCyc:PWY-7724
MetaCyc:PWY-7725SUPFAM:SSF53901TMHMM:TMhelixInterPro:Thiolase-likeUniPathway:UPA00094UniParc:UPI0004EF473B
SEG:seg:::::
Description
BnaA06g13570D3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A078GJG9]
Coordinates
chrLK032193:-:19119..21153
Molecular Weight (calculated)
55161.9 Da
IEP (calculated)
9.125
GRAVY (calculated)
-0.055
Length
495 amino acids
Sequence
(BLAST)
001: MDGAGESRLG GGDGHGSVGV QIRQTRRLPD FLQSVNLKYV KLGYHYLISN LLTLCLLPLA VVISVQASQT NPDDLRHLWI HLQYNLVSII TCSAILVFGL
101: TVYVMTRPRP VYLVDFSCYL PPDHLKAPFS RFMDHSRLTG DFEDSALEFQ RKILERSGLG EDTYVPEGMH HVPPRISMAA AREEAEQVMF GALDSLFANA
201: NVNPKEIGIL VVNCSLFNPT PSLSAMIVNK YKLRGNIRSY NLGGMGCSAG VIAVDLAKDM LLVHRKTYAV VVSTENITQN WYFGNNKAML IPNCLFRVGG
301: SAVLLSNKSS DKRRSKYRLS HVVRTHRGAD DKAFRCVYQE QDDTGRTGVS LSKDLMAIAG ETLKTNITTL GPLVLPISEQ ILFFTTLVVK KLFNGKVKPY
401: IPDFKLAFEH FCIHAGGRAV IDELEKNLQL SPVHVEASRM TLHRFGNTGN RVWQIAFGSG FKCNSAVWEA LRNVKPSKNS PWEDCIDKYP VTLSY
Best Arabidopsis Sequence Match ( AT1G19440.1 )
(BLAST)
001: MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY
Arabidopsis Description
KCS43-ketoacyl-CoA synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN49]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.