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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 1
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, endoplasmic reticulum, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:cytosol
 plastid: 21417358
msms PMID: 21417358 doi
DR Demartini, R Jain, G Agrawal, JJ Thelen
Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX90725
CDY05064

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G26640.1 CDX90725 AT4G09570.1 19130088
AT2G26640.1 CDY05064 AT4G09570.1 19130088
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra009413.1-P Field mustard cytosol, golgi, plasma membrane 99.22 98.45
CDX98800 Canola plastid 98.05 97.1
AT2G26640.1 Thale cress plasma membrane 91.23 91.94
VIT_04s0008g04710.t01 Wine grape endoplasmic reticulum, peroxisome, plasma membrane 81.48 81.8
Solyc08g067410.1.1 Tomato plasma membrane 80.12 81.39
Solyc06g065560.1.1 Tomato nucleus 81.09 81.09
PGSC0003DMT400019029 Potato plasma membrane 79.73 80.99
PGSC0003DMT400067205 Potato peroxisome 80.9 80.9
GSMUA_AchrUn_... Banana peroxisome 60.62 78.34
Zm00001d046444_P001 Maize plasma membrane 78.36 78.06
EER88601 Sorghum endoplasmic reticulum, plasma membrane, plastid 78.17 77.71
CDX94721 Canola cytosol 59.84 77.53
Os05t0574600-01 Rice endoplasmic reticulum, peroxisome, plastid 78.36 77.31
Solyc12g006820.1.1 Tomato plasma membrane 75.05 77.0
TraesCS7B01G254900.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 77.58 76.39
GSMUA_Achr10P... Banana plasma membrane 64.33 76.39
Os06t0598800-01 Rice cytosol, endoplasmic reticulum, plasma membrane 77.0 76.11
GSMUA_Achr7P08410_001 Banana endoplasmic reticulum, peroxisome, plasma membrane 57.89 75.96
TraesCS7D01G350500.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 77.0 75.82
PGSC0003DMT400002734 Potato cytosol, peroxisome, plasma membrane 75.44 75.73
Zm00001d016438_P001 Maize endoplasmic reticulum, peroxisome, plasma membrane 76.22 75.63
TraesCS6D01G166600.1 Wheat endoplasmic reticulum, peroxisome, plasma membrane 77.19 75.57
TraesCS6B01G207000.1 Wheat endoplasmic reticulum, plasma membrane, plastid 77.19 75.57
EES19987 Sorghum cytosol, endoplasmic reticulum, plastid 75.05 75.05
EES06493 Sorghum endoplasmic reticulum, peroxisome, plasma membrane, plastid 75.63 74.05
TraesCS7A01G372300.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 75.83 73.95
Zm00001d039094_P001 Maize cytosol 71.93 72.5
Os02t0205500-01 Rice cytosol, peroxisome, plasma membrane 72.9 72.06
CDY15199 Canola cytosol 47.76 72.06
HORVU1Hr1G090730.1 Barley peroxisome, plasma membrane, plastid 72.71 72.01
CDY63070 Canola cytosol 51.27 71.47
TraesCS1A01G413400.1 Wheat endoplasmic reticulum, peroxisome, plasma membrane 71.73 70.77
TraesCS1D01G420900.1 Wheat peroxisome 71.54 70.71
CDY14892 Canola endoplasmic reticulum, golgi, plastid 71.34 69.58
CDX89699 Canola cytosol 44.05 69.54
CDX89834 Canola plasma membrane 70.37 69.29
TraesCS6A01G177700.1 Wheat plastid 77.39 69.28
CDX96912 Canola endoplasmic reticulum, golgi, plastid 71.15 69.26
HORVU6Hr1G036950.5 Barley cytosol, peroxisome 77.19 68.63
CDY18212 Canola plasma membrane 69.98 67.86
HORVU7Hr1G084610.6 Barley cytosol, mitochondrion, plastid 77.78 66.5
CDY47457 Canola cytosol, endoplasmic reticulum, plasma membrane 50.29 66.32
CDY29431 Canola plasma membrane 62.38 66.12
CDY21665 Canola plasma membrane 65.69 66.08
CDX81929 Canola plasma membrane 65.5 65.88
CDY26665 Canola cytosol, peroxisome, plasma membrane 62.96 65.25
CDY10355 Canola cytosol 32.36 64.34
CDX71278 Canola cytosol, peroxisome, plasma membrane 62.96 63.71
CDY46211 Canola cytosol, peroxisome, plasma membrane 62.57 63.31
CDY46243 Canola golgi 58.48 63.29
CDX76286 Canola golgi 58.48 63.29
CDY07381 Canola plasma membrane 57.5 59.36
CDY04232 Canola plasma membrane 56.92 58.75
CDX90012 Canola cytosol 60.04 58.22
CDY02266 Canola endoplasmic reticulum, golgi, plasma membrane 50.29 57.98
CDY26762 Canola endoplasmic reticulum, peroxisome, plasma membrane 53.22 57.84
CDX69040 Canola cytosol, endoplasmic reticulum, plasma membrane, plastid 52.05 57.54
CDX89700 Canola endoplasmic reticulum, golgi, plasma membrane 48.15 57.31
CDY17465 Canola plasma membrane 53.02 57.26
CDY42109 Canola plasma membrane 55.36 57.14
CDX75415 Canola cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 51.66 57.11
CDY32443 Canola plasma membrane 52.83 56.69
CDY37475 Canola plasma membrane 52.83 56.69
CDX71202 Canola endoplasmic reticulum, golgi, plasma membrane 52.44 56.39
CDX72475 Canola endoplasmic reticulum, golgi 46.2 56.03
CDY47458 Canola cytosol 5.46 56.0
CDY49290 Canola endoplasmic reticulum, golgi 46.0 55.79
CDX76287 Canola endoplasmic reticulum, golgi, plasma membrane 53.8 54.55
CDX77038 Canola cytosol, endoplasmic reticulum, plasma membrane 55.56 53.57
CDY11498 Canola endoplasmic reticulum, peroxisome, plasma membrane 56.73 53.1
CDY35309 Canola cytosol, endoplasmic reticulum, plasma membrane 56.53 52.82
CDX76724 Canola cytosol, endoplasmic reticulum, plasma membrane 56.14 52.65
CDY37951 Canola endoplasmic reticulum, plasma membrane 40.94 46.77
CDY49219 Canola endoplasmic reticulum, plasma membrane 40.94 46.36
CDX68323 Canola endoplasmic reticulum, golgi 40.35 45.9
CDY66107 Canola endoplasmic reticulum, plasma membrane, plastid 40.16 45.88
CDY05644 Canola plasma membrane, plastid, vacuole 39.96 44.86
CDY33931 Canola plastid 39.57 44.42
CDY41551 Canola golgi 52.44 42.77
CDX80041 Canola endoplasmic reticulum, golgi, plasma membrane 52.44 42.23
CDY49218 Canola plasma membrane 0.58 1.05
Protein Annotations
KEGG:00061+2.3.1.180KEGG:00062+2.3.1.199KEGG:00650+2.3.1.19InterPro:3-ktacl-CoA_synGene3D:3.40.47.10MapMan:5.1.6.1.1
GO:A0A078BZQ8InterPro:ACP_syn_III_CEnsemblPlants:CDX70186ProteinID:CDX70186ProteinID:CDX70186.1InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0006629GO:GO:0006633GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0016740GO:GO:0016747
EnsemblPlantsGene:GSBRNA2T00136307001InterPro:IPR016039PFAM:PF08392PFAM:PF08541PIRSF:PIRSF036417PANTHER:PTHR31561
PANTHER:PTHR31561:SF19MetaCyc:PWY-4381MetaCyc:PWY-5080MetaCyc:PWY-5972MetaCyc:PWY-6433MetaCyc:PWY-6598
MetaCyc:PWY-7036MetaCyc:PWY-7601MetaCyc:PWY-7602MetaCyc:PWY-7619MetaCyc:PWY-7724MetaCyc:PWY-7725
SUPFAM:SSF53901TMHMM:TMhelixInterPro:Thiolase-likeUniPathway:UPA00094UniParc:UPI0004EEE629SEG:seg
Description
BnaA10g25350D
Coordinates
chrLK031790:+:3460078..3462041
Molecular Weight (calculated)
57801.5 Da
IEP (calculated)
9.471
GRAVY (calculated)
-0.098
Length
513 amino acids
Sequence
(BLAST)
001: MSAEEKRRPL ISASPSSDRN LPDFKKSVKL KYVKLGYHYL ITHGMYLLLS PLLLLIAAQV STFSRADLAT LWDHLQYNLI SVILCSTLLV FITTIYVMTR
101: PRPVYLVDFS CYKPDDARKC TKKIFMERSK LTGSFTEENL EFQRKILQRS GLGEATYLPE AVLNVPPNPC MAEARKEAEA VMFGAIDELL AKTNVNPKDI
201: GILIVNCSLF NPTPSLSAMI VNHYKLRGNI LSYNLGGMGC SAGLISIDLA KHLLNSIPNT YAMVISMENI TLNWYFGNDR SKLVSNCLFR MGGAAVLLSN
301: KRWDRRRSKY ELVDTVRTHK GADDKCFGCV TQEEDSASKV GVTLSKDLMA VAGDALKTNI TTLGPLVLPT SEQLLFFATL VGRKLFKMKI KPYIPDFKLA
401: FEHFCIHAGG RAVLDELEKN LKLTDWHMEP SRMTLYRFGN TSSSSLWYEL AYSEAKGRIK KGDRIWQIAF GSGFKCNSSV WRAVRSVNPK KEKNPWMDEI
501: HEFPVDVPTH ATI
Best Arabidopsis Sequence Match ( AT2G26640.1 )
(BLAST)
001: MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI
Arabidopsis Description
KCS113-ketoacyl-CoA synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48780]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.