Factsheet for GSMUA_Achr10P28420_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
endoplasmic reticulum 2
cytosol 1
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26640.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT2G26640.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT2G26640.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT2G26640.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P08410_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	81.94	90.54
GSMUA_AchrUn_...	Banana	peroxisome	78.24	85.14
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	80.56	68.1
EER88601	Sorghum	endoplasmic reticulum, plasma membrane, plastid	80.56	67.44
KRH03757	Soybean	cytosol, peroxisome, plasma membrane	79.4	67.25
Zm00001d046444_P001	Maize	plasma membrane	80.09	67.18
KRH56654	Soybean	endoplasmic reticulum	79.17	67.06
AT2G26640.1	Thale cress	plasma membrane	78.01	66.21
Os06t0598800-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	79.4	66.09
Solyc06g065560.1.1	Tomato	nucleus	78.01	65.69
PGSC0003DMT400067205	Potato	peroxisome	78.01	65.69
KRH63016	Soybean	cytosol, peroxisome, plasma membrane	77.55	65.69
Solyc08g067410.1.1	Tomato	plasma membrane	76.62	65.54
PGSC0003DMT400019029	Potato	plasma membrane	76.16	65.15
TraesCS7B01G254900.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	78.24	64.88
TraesCS6D01G166600.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	78.24	64.5
CDX70186	Canola	plastid	76.39	64.33
KRH54862	Soybean	cytosol, peroxisome, plasma membrane	75.93	64.31
TraesCS6B01G207000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	77.78	64.12
TraesCS7D01G350500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	77.08	63.92
CDX98800	Canola	plastid	76.62	63.9
Bra009413.1-P	Field mustard	cytosol, golgi, plasma membrane	76.39	63.83
TraesCS7A01G372300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	76.39	62.74
Zm00001d016438_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	75.0	62.67
Solyc12g006820.1.1	Tomato	plasma membrane	72.45	62.6
EES06493	Sorghum	endoplasmic reticulum, peroxisome, plasma membrane, plastid	75.23	62.02
PGSC0003DMT400002734	Potato	cytosol, peroxisome, plasma membrane	72.92	61.64
Os02t0205500-01	Rice	cytosol, peroxisome, plasma membrane	72.92	60.69
TraesCS6A01G177700.1	Wheat	plastid	78.01	58.81
HORVU6Hr1G036950.5	Barley	cytosol, peroxisome	77.78	58.23
VIT_11s0016g04700.t01	Wine grape	plastid	82.87	58.02
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	64.81	57.38
GSMUA_Achr6P23320_001	Banana	endoplasmic reticulum, golgi, vacuole	52.08	56.39
HORVU7Hr1G084610.6	Barley	cytosol, mitochondrion, plastid	77.78	56.0
GSMUA_Achr6P27270_001	Banana	cytosol, peroxisome, plasma membrane	54.17	55.45
GSMUA_Achr9P06980_001	Banana	cytosol, golgi, peroxisome	59.49	54.56
GSMUA_Achr8P30930_001	Banana	endoplasmic reticulum, extracellular	46.99	52.59
GSMUA_Achr3P02180_001	Banana	plasma membrane	41.2	50.42
GSMUA_Achr2P08980_001	Banana	golgi, peroxisome, plasma membrane	53.47	50.0
GSMUA_Achr1P02540_001	Banana	cytosol	49.07	50.0
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi, plasma membrane	50.93	49.66
GSMUA_Achr3P07400_001	Banana	plasma membrane	44.68	49.61
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	49.54	47.98
GSMUA_Achr5P09090_001	Banana	golgi, peroxisome, plasma membrane	46.53	47.97
GSMUA_Achr5P05870_001	Banana	plasma membrane	46.06	47.38
GSMUA_Achr2P21590_001	Banana	golgi, peroxisome, plastid	42.13	47.15
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	47.45	45.96
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	51.16	45.38

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	EnsemblPlantsGene:GSMUA_Achr10G28420_001	EnsemblPlants:GSMUA_Achr10P28420_001	EnsemblPlants:GSMUA_Achr10T28420_001
InterPro:IPR016039	UniProt:M0RM66	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561
PANTHER:PTHR31561:SF19	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000294B253	:

Description

3-ketoacyl-CoA synthase 11 [Source:GMGC_GENE;Acc:GSMUA_Achr10G28420_001]

Coordinates

chr10:+:31222406..31223944

Molecular Weight (calculated)

48595.4 Da

IEP (calculated)

9.713

GRAVY (calculated)

0.044

Length

432 amino acids

Sequence
(BLAST)

001: MAEAEQRPNA PLLQSSSSRL PDFKQSVKLK YVKLGYHYLI SHGMFLFFSP LIAVVVAQLS TLSVKDLHDL WDHLRFNLIS VILCSALLVF LFTVYFLRRP
101: RPVYLVNFAC YKPEEARKCT RQVFMNRSTL TGSFTEENLA TVMFGAIDEL LAKTNVKPKD IGILIVNCSL FNPTPSLSAM VVNHYKLRGN IVSYNLGGMG
201: CSAGLLSINL AKDLLQVYPN SYALVISMEN ITLNWYFGNN RSMLVSNCLF RMGGAAILLS NKRSDRRRSK YQLVHSVRTH KGADDKCFSC VTQEEDEIGK
301: IGVSLSKDLM AVAGDALKTN ITTLGPLVLP MSEQLIFFAT LLSEWHMEPS RMTLYRFGNT SSSSLWYELA YSEGKGRIKK KDRIWQIAFG SGFKCNSAVW
401: KALKTINPAK EKNPWMDEIN DFPVVVPKVS AL

Best Arabidopsis Sequence Match ( AT2G26640.1 )
(BLAST)

001: MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI

Arabidopsis Description

KCS113-ketoacyl-CoA synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48780]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.