CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane, peroxisome

Predictor Summary:

plastid 2
endoplasmic reticulum 2
cytosol 1
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, plasma membrane, plastid
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
EES09373
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26640.1	EES09373	AT4G09570.1	19130088
AT2G26640.1	EES16732	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016438_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	95.99	97.29
EER88601	Sorghum	endoplasmic reticulum, plasma membrane, plastid	83.59	84.88
Os02t0205500-01	Rice	cytosol, peroxisome, plasma membrane	80.92	81.7
TraesCS6D01G166600.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	81.68	81.68
TraesCS6B01G207000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	81.68	81.68
GSMUA_AchrUn_...	Banana	peroxisome	58.97	77.83
KRH56654	Soybean	endoplasmic reticulum	75.57	77.65
KRH03757	Soybean	cytosol, peroxisome, plasma membrane	75.19	77.25
Solyc08g067410.1.1	Tomato	plasma membrane	74.43	77.23
PGSC0003DMT400019029	Potato	plasma membrane	74.05	76.83
EES19987	Sorghum	cytosol, endoplasmic reticulum, plastid	74.81	76.41
PGSC0003DMT400067205	Potato	peroxisome	74.24	75.83
Solyc06g065560.1.1	Tomato	nucleus	74.24	75.83
CDX70186	Canola	plastid	74.05	75.63
AT2G26640.1	Thale cress	plasma membrane	73.28	75.44
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	73.47	75.34
GSMUA_Achr10P...	Banana	plasma membrane	62.02	75.23
CDX98800	Canola	plastid	74.05	74.9
Bra009413.1-P	Field mustard	cytosol, golgi, plasma membrane	73.86	74.85
TraesCS6A01G177700.1	Wheat	plastid	81.68	74.69
GSMUA_Achr7P08410_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	55.53	74.42
KRH63016	Soybean	cytosol, peroxisome, plasma membrane	72.33	74.31
HORVU6Hr1G036950.5	Barley	cytosol, peroxisome	81.68	74.18
KRH54862	Soybean	cytosol, peroxisome, plasma membrane	71.37	73.33
Solyc12g006820.1.1	Tomato	plasma membrane	69.47	72.8
PGSC0003DMT400002734	Potato	cytosol, peroxisome, plasma membrane	69.47	71.23
EES19964	Sorghum	endoplasmic reticulum, plasma membrane, plastid	66.6	67.12
VIT_11s0016g04700.t01	Wine grape	plastid	75.95	64.51
EER92628	Sorghum	plasma membrane	60.69	64.37
KXG28804	Sorghum	plastid	62.98	63.22
EER91722	Sorghum	peroxisome	60.5	59.25
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	58.97	58.08
EER95458	Sorghum	mitochondrion	55.53	55.01
KXG39781	Sorghum	peroxisome	57.63	55.01
EER95395	Sorghum	cytosol, peroxisome, plasma membrane	55.53	53.59
KXG30818	Sorghum	golgi, mitochondrion	48.66	52.36
EER91618	Sorghum	plastid	51.91	51.91
KXG19727	Sorghum	mitochondrion, plastid	47.9	50.91
EER89559	Sorghum	mitochondrion, plasma membrane	46.56	49.8
EER89567	Sorghum	endoplasmic reticulum, golgi, plastid	41.41	47.59
KXG19733	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	43.32	47.19
OQU76197	Sorghum	golgi	41.6	45.51
EER88189	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	41.79	45.44
EES03073	Sorghum	endoplasmic reticulum, golgi, plasma membrane	42.37	45.31
EES00849	Sorghum	endoplasmic reticulum, golgi	42.18	44.74
EES19986	Sorghum	cytosol	7.06	16.74

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	EntrezGene:8071662
InterPro:ACP_syn_III_C	UniProt:C5XXY2	EnsemblPlants:EES06493	ProteinID:EES06493	ProteinID:EES06493.1	InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF8	MetaCyc:PWY-4381	MetaCyc:PWY-5080	MetaCyc:PWY-5972	MetaCyc:PWY-6433
MetaCyc:PWY-6598	MetaCyc:PWY-7036	MetaCyc:PWY-7601	MetaCyc:PWY-7602	MetaCyc:PWY-7619	MetaCyc:PWY-7724
MetaCyc:PWY-7725	EnsemblPlantsGene:SORBI_3004G086800	SUPFAM:SSF53901	unigene:Sbi.228	TMHMM:TMhelix	InterPro:Thiolase-like
UniParc:UPI0001A85CCA	RefSeq:XP_002453517.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:7299823..7302634

Molecular Weight (calculated)

58188.5 Da

IEP (calculated)

8.962

GRAVY (calculated)

-0.103

Length

524 amino acids

Sequence
(BLAST)

001: MENPAPPTDP AAATGATPTP SSSPSRQLPD FQQSVRLKYV KLGYHYLISH GMYLLLTPLM VLVAVHLSTL SPRDVADLWA HLRLNLISVV ACSTLLVFLG
101: TVYFLTRPRP VYLVDFACYK PGPERRCTRD TFMRCSRLTG CFTDGSLEFQ RKILERSGLG EETYLPPAVT RVPPNPSMDE ARAEAREVMF GAVDELLAKT
201: GVKPKDIGIL VVNCSLFNPT PSLSAMVVNH YKLRGNVVSY NLGGMGCSAG LLSVDLARDL LQTHPGSYAL VISTENITLN WYSGNDRSKL VSNCLFRMGG
301: AAVLLSNRRS DRRRAKYELV HTVRTHKGAD DRCFGCVTQE EDGEGVLGVS LSRDLMAVAG DALKTNITTL GPLVLPLSEQ LLFMATLVAK KVLKMKKVKP
401: YIPDFKLAFE HFCIHAGGRA VLDELESNLS LTDWHMEPSR MTLHRFGNTS SSSLWYELAY SEAKGRIRRR HRVWQIAFGS GFKCNSAVWR ALRSVNPAEE
501: TNPWMDEIDR FPVDVPKVSK VTSD

Best Arabidopsis Sequence Match ( AT2G26640.1 )
(BLAST)

001: MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI

Arabidopsis Description

KCS113-ketoacyl-CoA synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48780]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.