Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G207000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 99.05 | 99.05 |
| TraesCS6A01G177700.1 | Wheat | plastid | 98.86 | 90.4 |
| HORVU6Hr1G036950.5 | Barley | cytosol, peroxisome | 98.28 | 89.25 |
| Zm00001d016438_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 82.44 | 83.56 |
| EES06493 | Sorghum | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 81.68 | 81.68 |
| TraesCS7D01G350500.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 80.53 | 81.0 |
| Os02t0205500-01 | Rice | cytosol, peroxisome, plasma membrane | 78.44 | 79.19 |
| KRH56654 | Soybean | endoplasmic reticulum | 76.34 | 78.43 |
| GSMUA_AchrUn_... | Banana | peroxisome | 59.35 | 78.34 |
| GSMUA_Achr10P... | Banana | plasma membrane | 64.5 | 78.24 |
| KRH03757 | Soybean | cytosol, peroxisome, plasma membrane | 75.95 | 78.04 |
| VIT_04s0008g04710.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 75.57 | 77.5 |
| Solyc06g065560.1.1 | Tomato | nucleus | 75.76 | 77.39 |
| PGSC0003DMT400067205 | Potato | peroxisome | 75.76 | 77.39 |
| Solyc08g067410.1.1 | Tomato | plasma membrane | 74.43 | 77.23 |
| CDX70186 | Canola | plastid | 75.57 | 77.19 |
| Bra009413.1-P | Field mustard | cytosol, golgi, plasma membrane | 75.95 | 76.98 |
| PGSC0003DMT400019029 | Potato | plasma membrane | 74.05 | 76.83 |
| GSMUA_Achr7P08410_001 | Banana | endoplasmic reticulum, peroxisome, plasma membrane | 57.25 | 76.73 |
| CDX98800 | Canola | plastid | 75.76 | 76.64 |
| AT2G26640.1 | Thale cress | plasma membrane | 74.43 | 76.62 |
| KRH63016 | Soybean | cytosol, peroxisome, plasma membrane | 74.43 | 76.47 |
| KRH54862 | Soybean | cytosol, peroxisome, plasma membrane | 73.28 | 75.29 |
| Solyc12g006820.1.1 | Tomato | plasma membrane | 71.18 | 74.6 |
| PGSC0003DMT400002734 | Potato | cytosol, peroxisome, plasma membrane | 71.76 | 73.58 |
| TraesCS1D01G420900.1 | Wheat | peroxisome | 69.47 | 70.13 |
| TraesCS4D01G148300.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 64.69 | 66.21 |
| VIT_11s0016g04700.t01 | Wine grape | plastid | 76.91 | 65.32 |
| TraesCS1D01G414600.1 | Wheat | peroxisome | 64.89 | 64.76 |
| TraesCS4D01G242200.1 | Wheat | mitochondrion, plasma membrane | 59.35 | 62.7 |
| TraesCS6D01G071600.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 64.89 | 62.39 |
| TraesCS4D01G277300.1 | Wheat | golgi | 52.67 | 54.22 |
| TraesCS4D01G226100.1 | Wheat | peroxisome | 55.34 | 53.8 |
| TraesCS1D01G374700.1 | Wheat | plasma membrane | 50.38 | 52.07 |
| TraesCS1D01G401000.1 | Wheat | plasma membrane | 45.8 | 51.72 |
| TraesCS4D01G296400.1 | Wheat | cytosol, peroxisome, plasma membrane | 52.48 | 50.93 |
| TraesCS7D01G208600.1 | Wheat | cytosol | 36.45 | 50.0 |
| TraesCS7D01G519300.1 | Wheat | golgi, plasma membrane | 45.23 | 49.58 |
| TraesCS6D01G274600.1 | Wheat | golgi, plasma membrane | 45.61 | 49.38 |
| TraesCS7D01G519400.1 | Wheat | plasma membrane | 44.85 | 49.06 |
| TraesCS7D01G035700.1 | Wheat | plasma membrane | 45.23 | 48.87 |
| TraesCS7D01G208500.1 | Wheat | golgi | 45.61 | 48.38 |
| TraesCS7D01G029500.1 | Wheat | plasma membrane | 41.98 | 48.14 |
| TraesCS2D01G508000.1 | Wheat | mitochondrion | 29.2 | 48.11 |
| TraesCS4D01G008100.1 | Wheat | plasma membrane | 39.12 | 47.9 |
| TraesCS7D01G209400.1 | Wheat | cytosol | 33.78 | 47.33 |
| TraesCS4D01G273400.1 | Wheat | endoplasmic reticulum | 43.32 | 47.0 |
| TraesCS7D01G102300.1 | Wheat | mitochondrion | 25.95 | 46.9 |
| TraesCS3D01G444000.1 | Wheat | golgi | 43.13 | 46.22 |
| TraesCS7D01G089200.1 | Wheat | endoplasmic reticulum, plasma membrane | 41.41 | 45.88 |
| TraesCS6D01G321600.1 | Wheat | golgi | 43.89 | 45.73 |
| TraesCS1D01G042300.1 | Wheat | golgi | 41.41 | 45.4 |
| TraesCS1D01G039200.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 41.41 | 44.65 |
| TraesCS7D01G208800.1 | Wheat | endoplasmic reticulum | 40.84 | 44.12 |
| TraesCS7D01G208700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 38.55 | 43.72 |
| TraesCS2D01G508200.1 | Wheat | plasma membrane, plastid | 37.98 | 43.45 |
| TraesCS5D01G089800.1 | Wheat | golgi | 40.46 | 43.35 |
| TraesCS2D01G508300.1 | Wheat | endoplasmic reticulum, plasma membrane | 37.79 | 42.95 |
| TraesCS3D01G279300.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 39.89 | 42.92 |
| TraesCS7D01G102900.1 | Wheat | golgi, plasma membrane, plastid | 38.55 | 42.08 |
| TraesCS7D01G102800.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 35.88 | 41.87 |
| TraesCS4D01G008200.1 | Wheat | plasma membrane | 39.12 | 41.67 |
| TraesCS7D01G102000.1 | Wheat | mitochondrion, plastid | 38.93 | 41.05 |
| TraesCS7D01G102400.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 37.21 | 40.62 |
| TraesCS5D01G017000.1 | Wheat | endoplasmic reticulum, golgi, plastid | 35.31 | 39.19 |
| TraesCS1D01G420600.2 | Wheat | cytosol | 7.63 | 18.1 |
Protein Annotations
| KEGG:00061+2.3.1.180 | KEGG:00062+2.3.1.199 | InterPro:3-ktacl-CoA_syn | Gene3D:3.40.47.10 | MapMan:5.1.6.1.1 | InterPro:ACP_syn_III_C |
| InterPro:FAE1_typ3_polyketide_synth | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006629 | GO:GO:0006633 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 |
| GO:GO:0016747 | InterPro:IPR016039 | PFAM:PF08392 | PFAM:PF08541 | PIRSF:PIRSF036417 | PANTHER:PTHR31561 |
| PANTHER:PTHR31561:SF8 | SUPFAM:SSF53901 | TMHMM:TMhelix | InterPro:Thiolase-like | EnsemblPlantsGene:TraesCS6D01G166600 | EnsemblPlants:TraesCS6D01G166600.1 |
| TIGR:cd00831 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:148482236..148483810
Molecular Weight (calculated)
58361.1 Da
IEP (calculated)
8.978
GRAVY (calculated)
-0.023
Length
524 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMEDSTPPA GAGASAGEGA SSPSPSRRLP DFLQSVRLKY VKLGYHYLIT HGMYLLLTPL IVLIAVHLST LSPGDVADLW THLRFNLLSV IACSTLLVFL
101: STVYFLTRPR SVYLVDFGCY KPGPERRCSR ETFMRCSKLT GNFTEANLDF QRKILERSGL GEDTYIPPAL VTVPPNPSME LARQEAQVCM FGAIDNMLAK
201: TGVKPKDIGI LVVNCSLFNP TPSLSAMVVN HYKLRGNIVS YNLGGMGCSA GLLSIDLAKD LLQVHPNSYA MVVSTENITL NWYFGNNRSM LVSNCLFRMG
301: CAAILLSNKR SDRRRSKYEL VHTVRTHKGA DDKCFSCVTQ EEDDSGKVGV ALSKDLMAVA GDALKTNITT LGPLVLPFSE QLLFMVTLVG KKLFKMKIKP
401: YIPDFKLAFE HFCIHAGGRA VLDEIEKNMD LTDWHMEPSR MTLFRFGNTS SSSLWYELAY SEAKGRIRRR DRIWQIAFGS GFKCNSAVWK ALRSVNPAKE
501: QNNPWMDEID TFPVVVPKVS KVVE
101: STVYFLTRPR SVYLVDFGCY KPGPERRCSR ETFMRCSKLT GNFTEANLDF QRKILERSGL GEDTYIPPAL VTVPPNPSME LARQEAQVCM FGAIDNMLAK
201: TGVKPKDIGI LVVNCSLFNP TPSLSAMVVN HYKLRGNIVS YNLGGMGCSA GLLSIDLAKD LLQVHPNSYA MVVSTENITL NWYFGNNRSM LVSNCLFRMG
301: CAAILLSNKR SDRRRSKYEL VHTVRTHKGA DDKCFSCVTQ EEDDSGKVGV ALSKDLMAVA GDALKTNITT LGPLVLPFSE QLLFMVTLVG KKLFKMKIKP
401: YIPDFKLAFE HFCIHAGGRA VLDEIEKNMD LTDWHMEPSR MTLFRFGNTS SSSLWYELAY SEAKGRIRRR DRIWQIAFGS GFKCNSAVWK ALRSVNPAKE
501: QNNPWMDEID TFPVVVPKVS KVVE
001: MSHNQNQPHR PVPVHVTNAE PNPNPNNLPN FLLSVRLKYV KLGYHYLISN ALYILLLPLL AATIANLSSF TINDLSLLYN TLRFHFLSAT LATALLISLS
101: TAYFTTRPRR VFLLDFSCYK PDPSLICTRE TFMDRSQRVG IFTEDNLAFQ QKILERSGLG QKTYFPEALL RVPPNPCMEE ARKEAETVMF GAIDAVLEKT
201: GVKPKDIGIL VVNCSLFNPT PSLSAMIVNK YKLRGNILSY NLGGMGCSAG LISIDLAKQM LQVQPNSYAL VVSTENITLN WYLGNDRSML LSNCIFRMGG
301: AAVLLSNRSS DRSRSKYQLI HTVRTHKGAD DNAFGCVYQR EDNNAEETGK IGVSLSKNLM AIAGEALKTN ITTLGPLVLP MSEQLLFFAT LVARKVFKVK
401: KIKPYIPDFK LAFEHFCIHA GGRAVLDEIE KNLDLSEWHM EPSRMTLNRF GNTSSSSLWY ELAYSEAKGR IKRGDRTWQI AFGSGFKCNS AVWKALRTID
501: PMDEKTNPWI DEIDDFPVQV PRITPITSS
101: TAYFTTRPRR VFLLDFSCYK PDPSLICTRE TFMDRSQRVG IFTEDNLAFQ QKILERSGLG QKTYFPEALL RVPPNPCMEE ARKEAETVMF GAIDAVLEKT
201: GVKPKDIGIL VVNCSLFNPT PSLSAMIVNK YKLRGNILSY NLGGMGCSAG LISIDLAKQM LQVQPNSYAL VVSTENITLN WYLGNDRSML LSNCIFRMGG
301: AAVLLSNRSS DRSRSKYQLI HTVRTHKGAD DNAFGCVYQR EDNNAEETGK IGVSLSKNLM AIAGEALKTN ITTLGPLVLP MSEQLLFFAT LVARKVFKVK
401: KIKPYIPDFK LAFEHFCIHA GGRAVLDEIE KNLDLSEWHM EPSRMTLNRF GNTSSSSLWY ELAYSEAKGR IKRGDRTWQI AFGSGFKCNS AVWKALRTID
501: PMDEKTNPWI DEIDDFPVQV PRITPITSS
Arabidopsis Description
KCS203-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178UE45]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.