Factsheet for Zm00001d016438_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome

Predictor Summary:

plastid 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, plasma membrane
Any Predictor:	peroxisome, plastid, secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26640.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT2G26640.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT2G26640.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06493	Sorghum	endoplasmic reticulum, peroxisome, plasma membrane, plastid	97.29	95.99
Zm00001d046444_P001	Maize	plasma membrane	83.75	84.08
TraesCS6B01G207000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	83.56	82.44
TraesCS6D01G166600.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	83.56	82.44
Os02t0205500-01	Rice	cytosol, peroxisome, plasma membrane	82.59	82.27
KRH56654	Soybean	endoplasmic reticulum	76.98	78.04
GSMUA_AchrUn_...	Banana	peroxisome	59.77	77.83
KRH03757	Soybean	cytosol, peroxisome, plasma membrane	76.6	77.65
Solyc08g067410.1.1	Tomato	plasma membrane	75.44	77.23
PGSC0003DMT400019029	Potato	plasma membrane	75.05	76.83
PGSC0003DMT400067205	Potato	peroxisome	76.02	76.61
Solyc06g065560.1.1	Tomato	nucleus	76.02	76.61
Zm00001d039094_P001	Maize	cytosol	75.24	76.42
CDX70186	Canola	plastid	75.63	76.22
AT2G26640.1	Thale cress	plasma membrane	74.47	75.64
Bra009413.1-P	Field mustard	cytosol, golgi, plasma membrane	75.63	75.63
CDX98800	Canola	plastid	75.63	75.48
TraesCS6A01G177700.1	Wheat	plastid	83.56	75.39
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	74.47	75.34
GSMUA_Achr10P...	Banana	plasma membrane	62.67	75.0
KRH63016	Soybean	cytosol, peroxisome, plasma membrane	73.89	74.9
HORVU6Hr1G036950.5	Barley	cytosol, peroxisome	83.56	74.87
GSMUA_Achr7P08410_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	56.09	74.17
KRH54862	Soybean	cytosol, peroxisome, plasma membrane	72.92	73.92
Solyc12g006820.1.1	Tomato	plasma membrane	70.6	73.0
PGSC0003DMT400002734	Potato	cytosol, peroxisome, plasma membrane	70.6	71.43
Zm00001d009608_P001	Maize	plasma membrane	68.09	69.7
Zm00001d039053_P001	Maize	plasma membrane	67.89	68.29
Zm00001d048953_P001	Maize	mitochondrion, plastid	65.38	65.89
VIT_11s0016g04700.t01	Wine grape	plastid	77.56	64.99
Zm00001d048061_P001	Maize	golgi	61.9	64.78
Zm00001d028241_P003	Maize	endoplasmic reticulum, golgi, plasma membrane	61.12	63.97
Zm00001d045660_P001	Maize	mitochondrion	34.24	60.82
Zm00001d037328_P001	Maize	cytosol	42.55	59.95
Zm00001d030343_P001	Maize	cytosol, peroxisome, plasma membrane	61.12	59.07
Zm00001d028406_P001	Maize	peroxisome	59.19	55.94
Zm00001d047931_P001	Maize	peroxisome	58.99	55.86
Zm00001d032948_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	52.22	54.55
Zm00001d014168_P001	Maize	peroxisome, plasma membrane, plastid	52.61	53.86
Zm00001d051787_P001	Maize	mitochondrion	50.29	53.61
Zm00001d027904_P001	Maize	plastid	56.09	53.41
Zm00001d027766_P001	Maize	mitochondrion	54.35	53.12
Zm00001d017941_P001	Maize	plasma membrane	49.52	51.93
Zm00001d009354_P001	Maize	endoplasmic reticulum	43.33	46.09
Zm00001d044580_P001	Maize	mitochondrion	42.36	44.97
Zm00001d044579_P001	Maize	golgi	40.43	42.31

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:100285225	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1
InterPro:ACP_syn_III_C	ProteinID:AQK70748.1	EMBL:BT086455	UniProt:C4J6K8	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016746
GO:GO:0016747	InterPro:IPR016039	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561
PANTHER:PTHR31561:SF8	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000189D53A	EnsemblPlantsGene:Zm00001d016438
EnsemblPlants:Zm00001d016438_P001	EnsemblPlants:Zm00001d016438_T001	SEG:seg	:	:	:

Description

3-ketoacyl-CoA synthase

Coordinates

chr5:+:162295105..162296658

Molecular Weight (calculated)

57569.8 Da

IEP (calculated)

9.062

GRAVY (calculated)

-0.094

Length

517 amino acids

Sequence
(BLAST)

001: MENPAPPTNP ASATPSPSRQ LPDFQQSVRL KYVKLGYHYL ITHGMYLLLT PLMVLVAVYL STLSPRDVAD LWAHLRLNLI SVLACSTLLV FLGTAYFLTR
101: PRPVYLVDFA CYKPGPERRC TRDTFMRCSR LTGCFTDASL EFQRKILERS GLGEDTYLPP AVTRVPPNPS MDEARAEARE VMFGAVDELL AKTGVKPKDI
201: GILVVNCSLF NPTPSLSAMV VNHYKLRGNV VSYNLGGMGC SAGLLSVDLA KDLLQTHPGS YALVISTENI TLNWYSGNDR SKLVSNCLFR MGGAAVLLSN
301: RRSDRRRAKY ELVHTVRTHK GADDRCFGCV TQEEDGEGVV GVSLSRDLMA VAGDALKTNI TTLGPLVLPL SEQLLFMATL VAKKLLKMKK VKPYIPDFKL
401: AFEHFCIHAG GRAVLDELES NLALTDWHME PSRMTLHRFG NTSSSSLWYE LAYSEAKGRI RRRHRVWQIA FGSGFKCNSA VWRALRSVNP AEETNPWMDE
501: IDRFPVDVPK VSKVSSD

Best Arabidopsis Sequence Match ( AT2G26640.1 )
(BLAST)

001: MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI

Arabidopsis Description

KCS113-ketoacyl-CoA synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48780]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.