Factsheet for Zm00001d048953_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
MultiLoc:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0591200-01	Rice	mitochondrion	72.71	86.34
KXG28804	Sorghum	plastid	87.72	86.21
TraesCS6B01G098300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	79.34	79.34
TraesCS6A01G073300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	78.36	79.13
TraesCS4D01G148300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	78.95	79.1
TraesCS4A01G164400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	78.17	78.32
CDX94721	Canola	cytosol	58.67	76.01
TraesCS6D01G071600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	79.14	74.5
CDY63070	Canola	cytosol	51.07	71.2
KRH34362	Soybean	plasma membrane	70.18	69.63
KRG92437	Soybean	plasma membrane	69.98	69.44
KRH31633	Soybean	endoplasmic reticulum, nucleus, plastid	69.2	68.67
VIT_05s0020g04540.t01	Wine grape	plasma membrane	69.4	68.33
KRH69063	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	69.4	68.33
Zm00001d046444_P001	Maize	plasma membrane	67.84	67.57
Solyc09g083050.2.1	Tomato	plasma membrane	67.25	67.25
PGSC0003DMT400034973	Potato	plasma membrane	67.84	67.05
Solyc03g005320.2.1	Tomato	plasma membrane	67.25	66.47
PGSC0003DMT400015633	Potato	plasma membrane	67.45	66.41
PGSC0003DMT400042065	Potato	cytosol	47.95	66.13
Zm00001d016438_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	65.89	65.38
CDX89834	Canola	plasma membrane	66.08	65.07
Bra033694.1-P	Field mustard	golgi, peroxisome, plastid	66.67	65.02
CDY14892	Canola	endoplasmic reticulum, golgi, plastid	66.47	64.83
Bra035992.1-P	Field mustard	plasma membrane	66.28	64.64
Zm00001d039094_P001	Maize	cytosol	64.13	64.64
CDX96912	Canola	endoplasmic reticulum, golgi, plastid	66.28	64.52
AT1G04220.1	Thale cress	plasma membrane	66.28	64.39
Bra015296.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	66.28	64.27
AT5G43760.1	Thale cress	endoplasmic reticulum, plasma membrane, plastid	66.08	64.08
CDY18212	Canola	plasma membrane	66.08	64.08
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	57.12	60.04
Zm00001d045660_P001	Maize	mitochondrion	33.92	59.79
Zm00001d039053_P001	Maize	plasma membrane	59.06	58.95
Zm00001d009608_P001	Maize	plasma membrane	57.7	58.61
Solyc06g053870.2.1	Tomato	mitochondrion	55.36	58.44
PGSC0003DMT400041959	Potato	endoplasmic reticulum, golgi, vacuole	49.9	58.31
Solyc05g013220.2.1	Tomato	endoplasmic reticulum, golgi, plastid	55.36	57.61
PGSC0003DMT400042071	Potato	plasma membrane	54.78	57.58
Zm00001d037328_P001	Maize	cytosol	41.13	57.49
PGSC0003DMT400014188	Potato	endoplasmic reticulum, golgi, plasma membrane	55.17	57.4
Zm00001d028241_P003	Maize	endoplasmic reticulum, golgi, plasma membrane	55.17	57.29
Zm00001d048061_P001	Maize	golgi	54.58	56.68
PGSC0003DMT400041960	Potato	endoplasmic reticulum, golgi, vacuole	48.73	55.8
Zm00001d032948_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	53.22	55.15
Zm00001d014168_P001	Maize	peroxisome, plasma membrane, plastid	54.0	54.85
Solyc06g053900.2.1	Tomato	cytosol, plasma membrane, plastid	52.05	53.94
KRH04744	Soybean	endoplasmic reticulum, plasma membrane, vacuole	48.54	53.32
Zm00001d027766_P001	Maize	mitochondrion	54.97	53.31
Zm00001d030343_P001	Maize	cytosol, peroxisome, plasma membrane	55.17	52.9
KRH57768	Soybean	plasma membrane	47.95	52.45
Zm00001d028406_P001	Maize	peroxisome	54.58	51.19
Zm00001d051787_P001	Maize	mitochondrion	48.34	51.13
Zm00001d047931_P001	Maize	peroxisome	54.0	50.73
Zm00001d017941_P001	Maize	plasma membrane	48.73	50.71
Zm00001d027904_P001	Maize	plastid	49.9	47.15
Zm00001d009354_P001	Maize	endoplasmic reticulum	42.11	44.44
Zm00001d044580_P001	Maize	mitochondrion	41.33	43.53
Zm00001d044579_P001	Maize	golgi	41.91	43.52

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	UniProt:A0A1D6PR89
InterPro:ACP_syn_III_C	ProteinID:AQK49233.1	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039
PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF62	SUPFAM:SSF53901
TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000189D524	EnsemblPlantsGene:Zm00001d048953	EnsemblPlants:Zm00001d048953_P001	EnsemblPlants:Zm00001d048953_T001
SEG:seg	:	:	:	:	:

Description

3-ketoacyl-CoA synthase 2

Coordinates

chr4:+:10603315..10607553

Molecular Weight (calculated)

56038.7 Da

IEP (calculated)

9.776

GRAVY (calculated)

-0.010

Length

513 amino acids

Sequence
(BLAST)

001: METTAHAAAS GTIQNARHRT SALKLCYHLA VSNAMYLLLA PAAAAAAHWL SRHSAAELAG SARSAAAANP PLAVALLVLG AVLATAYLMQ RPRGVYLVDF
101: ACYKPGGEHV VTRETFMRQS EAAGVFTGDN LAFQRKILER SGLGQGTYFP KAVLNSPPNP CMAEARAEAE AVMFGAIDQV LAKTGVRARD IGVVVVNCSL
201: FNPTPSLSAM IVNHYKLRGN VASYNLGGMG CSAGLISIDL AKQLLQVHRD TYALVVSMEN ITLNWYWGNN RSMLMSNCLF RMGGAAVLLT NRRSERRRAK
301: YQLVHTVRTH HGADDRAYRC VFQEEDETGR VGVALSKDLM AVAGEALRTN ITTLGPLALP MSEQILFLAS LVARRVFGAR GVRPYIPDFK MAFEHFCIHA
401: GGRAVLDTIE KNLGLSAWHM EPSRMTLYRW GNTSSSSLWY ELAYTEAQGR VRRGHRAWQI AFGSGFKCNS AVWRALRTID PAKEKPAGGN PWVDEIHNFP
501: VEVPKVESVV MSS

Best Arabidopsis Sequence Match ( AT1G04220.1 )
(BLAST)

001: MNENHIQSDH MNNTIHVTNK KLPNFLLSVR LKYVKLGYHY LISNAVYILI LPVGLLAATS SSFSLTDLTL LYNHLLKFHF LSSTLFAALL IFLTTLYFTT
101: RPRRIFLLDF ACYKPDSSLI CTRETFMDRS QRVGIFTEDN LAFQQKILER SGLGQKTYFP EALLRVPPNP CMSEARKEAE TVMFGAIDAV LEKTGVNPKD
201: IGILVVNCSL FNPTPSLSAM IVNKYKLRGN VLSYNLGGMG CSAGLISIDL AKQLLQVQPN SYALVVSTEN ITLNWYLGND RSMLLSNCIF RMGGAAVLLS
301: NRSSDRCRSK YQLIHTVRTH KGSDDNAFNC VYQREDNDDN KQIGVSLSKN LMAIAGEALK TNITTLGPLV LPMSEQLLFF ATLVARKVFN VKKIKPYIPD
401: FKLAFEHFCI HAGGRAVLDE IEKNLDLSEW HMEPSRMTLN RFGNTSSSSL WYELAYSEAK GRIKRGDRTW QIAFGSGFKC NSAVWRALRT IDPSKEKKKK
501: TNPWIDEIHE FPVPVPRTSP VTSSSESR

Arabidopsis Description

KCS23-ketoacyl-CoA synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEP9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.