CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
plastid 1
cytosol 1
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92437	Soybean	plasma membrane	98.26	98.26
KRH69063	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	90.52	89.83
KRH31633	Soybean	endoplasmic reticulum, nucleus, plastid	88.01	88.01
VIT_05s0020g04540.t01	Wine grape	plasma membrane	86.65	85.99
Solyc09g083050.2.1	Tomato	plasma membrane	84.53	85.19
PGSC0003DMT400015633	Potato	plasma membrane	84.53	83.88
PGSC0003DMT400034973	Potato	plasma membrane	83.17	82.85
Solyc03g005320.2.1	Tomato	plasma membrane	82.4	82.08
KRH56654	Soybean	endoplasmic reticulum	76.02	77.06
KRH03757	Soybean	cytosol, peroxisome, plasma membrane	75.82	76.86
KRH63016	Soybean	cytosol, peroxisome, plasma membrane	74.85	75.88
Os11t0591200-01	Rice	mitochondrion	63.06	75.46
KRH54862	Soybean	cytosol, peroxisome, plasma membrane	74.27	75.29
Zm00001d048953_P001	Maize	mitochondrion, plastid	69.63	70.18
TraesCS6B01G098300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	68.86	69.4
TraesCS4D01G148300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	68.67	69.34
TraesCS6A01G073300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	68.09	69.29
KXG28804	Sorghum	plastid	69.05	68.39
TraesCS4A01G164400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	67.7	68.36
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	63.44	67.21
KRH51526	Soybean	plasma membrane	56.67	66.14
TraesCS6D01G071600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	68.67	65.14
KRH05829	Soybean	cytosol, peroxisome, plasma membrane	62.86	63.35
KRH15203	Soybean	plasma membrane	62.09	62.94
KRH68953	Soybean	cytosol, golgi, nucleus	63.83	62.26
KRG90814	Soybean	cytosol, golgi, plasma membrane	58.99	61.49
KRH35956	Soybean	plasma membrane	58.8	61.29
KRH04744	Soybean	endoplasmic reticulum, plasma membrane, vacuole	55.13	61.03
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	62.67	60.9
KRH57768	Soybean	plasma membrane	54.93	60.55
KRH45255	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	57.64	60.08
KRH52284	Soybean	nucleus	58.22	56.26
KRH61616	Soybean	nucleus	58.22	56.16
KRH10887	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	49.52	50.29
KRH21431	Soybean	peroxisome	48.36	49.12
KRH10421	Soybean	endoplasmic reticulum, plasma membrane	42.75	48.15
KRH12070	Soybean	endoplasmic reticulum, golgi	40.04	47.15

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:100782027	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1
InterPro:ACP_syn_III_C	EMBL:ACUP02006591	InterPro:FAE1_typ3_polyketide_synth	EnsemblPlantsGene:GLYMA_10G179400	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
UniProt:I1LC39	InterPro:IPR016039	EnsemblPlants:KRH34362	ProteinID:KRH34362	ProteinID:KRH34362.1	PFAM:PF08392
PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF25	MetaCyc:PWY-4381	MetaCyc:PWY-5080
MetaCyc:PWY-5972	MetaCyc:PWY-6433	MetaCyc:PWY-6598	MetaCyc:PWY-7036	MetaCyc:PWY-7601	MetaCyc:PWY-7602
MetaCyc:PWY-7619	MetaCyc:PWY-7724	MetaCyc:PWY-7725	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like
UniParc:UPI000233D0CD	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:41254802..41257804

Molecular Weight (calculated)

57996.7 Da

IEP (calculated)

9.222

GRAVY (calculated)

-0.033

Length

517 amino acids

Sequence
(BLAST)

001: MADHTPGSGT VSVEASSQER RKLPNFLLSV RLKYVKLGYH YLISNAMYLL LIPLLGVASA HLSTISYQDV VQLWENLKFN LVSVTLCSSL IVFLVTFYFM
101: SRPRGVYLVD FACYKPEPDC TCTREIFMHR SVETGVFSEE NLAFQKKILE RSGLGQKTYL PPAILSIPPN PCMAEARKEA EQVMFGAIDQ LLEKTGVKAK
201: DIGILVVNCS LFNPTPSLSA MIVNHYKLRG NIQSYNLGGM GCSAGLISID LAKQLLQVHP NSYALVVSME NITLNWYFGN NRSMLVSNCL FRMGGAAVLL
301: SNKSSDRRRA KYQLIHTVRT HKGADDRSYG CVFQEEDEKK TIGVALSKDL MAVAGEALKT NITTLGPLVL PMSEQLLFFA TLVARKVFKM KIKPYIPDFK
401: LAFEHFCIHA GGRAVLDELE KNLELSDWHM EPSRMTLNRF GNTSSSSLWY ELAYTEAKGR IRKGDRTWQI AFGSGFKCNS AVWRALRTIN PAKEKNPWMD
501: EIHEFPVHVP KVATISS

Best Arabidopsis Sequence Match ( AT1G04220.1 )
(BLAST)

001: MNENHIQSDH MNNTIHVTNK KLPNFLLSVR LKYVKLGYHY LISNAVYILI LPVGLLAATS SSFSLTDLTL LYNHLLKFHF LSSTLFAALL IFLTTLYFTT
101: RPRRIFLLDF ACYKPDSSLI CTRETFMDRS QRVGIFTEDN LAFQQKILER SGLGQKTYFP EALLRVPPNP CMSEARKEAE TVMFGAIDAV LEKTGVNPKD
201: IGILVVNCSL FNPTPSLSAM IVNKYKLRGN VLSYNLGGMG CSAGLISIDL AKQLLQVQPN SYALVVSTEN ITLNWYLGND RSMLLSNCIF RMGGAAVLLS
301: NRSSDRCRSK YQLIHTVRTH KGSDDNAFNC VYQREDNDDN KQIGVSLSKN LMAIAGEALK TNITTLGPLV LPMSEQLLFF ATLVARKVFN VKKIKPYIPD
401: FKLAFEHFCI HAGGRAVLDE IEKNLDLSEW HMEPSRMTLN RFGNTSSSSL WYELAYSEAK GRIKRGDRTW QIAFGSGFKC NSAVWRALRT IDPSKEKKKK
501: TNPWIDEIHE FPVPVPRTSP VTSSSESR

Arabidopsis Description

KCS23-ketoacyl-CoA synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEP9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.