CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
plastid 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52284	Soybean	nucleus	98.69	98.88
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	82.46	83.4
CDX77038	Canola	cytosol, endoplasmic reticulum, plasma membrane	78.17	78.76
Bra034298.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	75.37	76.95
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	69.78	76.8
AT2G26250.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	78.54	76.55
PGSC0003DMT400019063	Potato	cytosol, peroxisome, plasma membrane	76.87	76.3
CDY35309	Canola	cytosol, endoplasmic reticulum, plasma membrane	77.99	76.14
Bra007766.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	77.43	75.87
CDY11498	Canola	endoplasmic reticulum, peroxisome, plasma membrane	77.43	75.73
Solyc08g067260.2.1	Tomato	cytosol, peroxisome, plasma membrane	71.27	75.49
CDX76724	Canola	cytosol, endoplasmic reticulum, plasma membrane	76.87	75.32
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	62.5	75.11
Os03t0181500-01	Rice	plasma membrane	72.95	72.14
TraesCS4A01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	72.57	72.04
TraesCS4D01G296400.1	Wheat	cytosol, peroxisome, plasma membrane	72.39	71.85
TraesCS4B01G297500.1	Wheat	golgi	72.39	71.85
Zm00001d027904_P001	Maize	plastid	72.39	71.45
EER95395	Sorghum	cytosol, peroxisome, plasma membrane	72.39	71.45
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	58.02	69.73
HORVU4Hr1G076940.1	Barley	mitochondrion, peroxisome, plastid	55.04	67.35
KRG92437	Soybean	plasma membrane	56.16	58.22
KRH34362	Soybean	plasma membrane	56.16	58.22
KRH05829	Soybean	cytosol, peroxisome, plasma membrane	55.41	57.89
KRH15203	Soybean	plasma membrane	55.04	57.84
KRH63016	Soybean	cytosol, peroxisome, plasma membrane	55.04	57.84
KRH51526	Soybean	plasma membrane	47.39	57.34
KRH54862	Soybean	cytosol, peroxisome, plasma membrane	54.29	57.06
KRH56654	Soybean	endoplasmic reticulum	54.29	57.06
KRH10887	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	54.1	56.97
KRH03757	Soybean	cytosol, peroxisome, plasma membrane	53.73	56.47
KRH21431	Soybean	peroxisome	53.36	56.19
KRH69063	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	54.48	56.05
KRH31633	Soybean	endoplasmic reticulum, nucleus, plastid	53.92	55.9
KRH35956	Soybean	plasma membrane	51.68	55.85
KRG90814	Soybean	cytosol, golgi, plasma membrane	51.31	55.44
KRH45255	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	49.63	53.63
KRH68953	Soybean	cytosol, golgi, nucleus	52.24	52.83
KRH57768	Soybean	plasma membrane	40.86	46.7
KRH04744	Soybean	endoplasmic reticulum, plasma membrane, vacuole	40.67	46.68
KRH10421	Soybean	endoplasmic reticulum, plasma membrane	37.13	43.36
KRH12070	Soybean	endoplasmic reticulum, golgi	35.45	43.28

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:100778487	InterPro:3-ktacl-CoA_syn	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
EMBL:ACUP02002177	ncoils:Coil	InterPro:FAE1_typ3_polyketide_synth	EnsemblPlantsGene:GLYMA_04G057800	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
UniProt:I1JU36	InterPro:IPR016039	EnsemblPlants:KRH61616	ProteinID:KRH61616	ProteinID:KRH61616.1	PFAM:PF08392
PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF2	MetaCyc:PWY-4381	MetaCyc:PWY-5080
MetaCyc:PWY-5972	MetaCyc:PWY-6433	MetaCyc:PWY-6598	MetaCyc:PWY-7036	MetaCyc:PWY-7601	MetaCyc:PWY-7602
MetaCyc:PWY-7619	MetaCyc:PWY-7724	MetaCyc:PWY-7725	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like
UniParc:UPI00023394CD	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:4733371..4738757

Molecular Weight (calculated)

60957.6 Da

IEP (calculated)

9.407

GRAVY (calculated)

-0.228

Length

536 amino acids

Sequence
(BLAST)

001: MANNERDLFS AEIVNRGIEP SGPNAGSLTF SVRVRRRLPD FLQSVNLKYV KLGYHYLINH GIYLFTIPVL LVVFSAEVGS LSKEDLWKKL WEDARYDLAT
101: VLASFGVFVF TLSVYFMSRP RPIYLIDFAC YKPDDELKVS REQLMEVARK SGKFDEASLE FQKRMLMSSG IGDETYIPKA VIASTENTAT MKEGRAEASM
201: VMFGALDELF EKTRVRPKDV GVLVVNCSIF NPTPSLSAMI INHYKMRGNI LSYNLGGMGC SAGIIGVDLA KDILQANPNN YAVVVSTEMV GYNWYQGKDR
301: SMLIPNSFFR MGCSAVLLSN RRRDYSRAKY RLEHIVRTHK GADDRSFRCV YQEEDEQKLK GLKISKDLIE IGGDALKTNI TTLGPLVLPF SEQLLFFSTL
401: VWRHLFGSKN DGNSPSMKKP YIPDYKLAFE HFCVHAASKT ILDELQRNLE LSDKNIEASR MTLHRFGNTS SSSIWYELAY MEAKESVRRG DRVWQLAFGS
501: GFKCNSVVWR AMRRVTKPSR NPWLDCINRY PAPLNN

Best Arabidopsis Sequence Match ( AT2G26250.1 )
(BLAST)

001: MGRSNEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSREEIWKK LWDYDLATVI
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL

Arabidopsis Description

FDH3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VYA3]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.