Factsheet for GSMUA_Achr10P17420_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
cytosol 1
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	81.17	81.17
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	82.51	75.56
HORVU4Hr1G076940.1	Barley	mitochondrion, peroxisome, plastid	60.99	62.1
Os03t0181500-01	Rice	plasma membrane	75.34	61.99
EER95395	Sorghum	cytosol, peroxisome, plasma membrane	75.34	61.88
TraesCS4A01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	74.89	61.85
TraesCS4B01G297500.1	Wheat	golgi	74.66	61.67
TraesCS4D01G296400.1	Wheat	cytosol, peroxisome, plasma membrane	74.66	61.67
Zm00001d027904_P001	Maize	plastid	74.89	61.51
PGSC0003DMT400019063	Potato	cytosol, peroxisome, plasma membrane	71.52	59.07
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	69.28	58.3
CDX77038	Canola	cytosol, endoplasmic reticulum, plasma membrane	69.51	58.27
KRH61616	Soybean	nucleus	69.73	58.02
KRH52284	Soybean	nucleus	69.51	57.94
CDY35309	Canola	cytosol, endoplasmic reticulum, plasma membrane	70.18	57.01
Solyc08g067260.2.1	Tomato	cytosol, peroxisome, plasma membrane	64.35	56.72
Bra007766.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	69.51	56.67
CDY11498	Canola	endoplasmic reticulum, peroxisome, plasma membrane	69.51	56.57
AT2G26250.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	69.73	56.55
Bra034298.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	66.14	56.19
CDX76724	Canola	cytosol, endoplasmic reticulum, plasma membrane	68.61	55.94
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi, plasma membrane	51.57	51.92
GSMUA_Achr6P27270_001	Banana	cytosol, peroxisome, plasma membrane	48.21	50.95
GSMUA_Achr3P02180_001	Banana	plasma membrane	39.69	50.14
GSMUA_Achr9P06980_001	Banana	cytosol, golgi, peroxisome	52.91	50.11
GSMUA_Achr5P09090_001	Banana	golgi, peroxisome, plasma membrane	46.19	49.16
GSMUA_Achr2P21590_001	Banana	golgi, peroxisome, plastid	42.38	48.96
GSMUA_Achr3P07400_001	Banana	plasma membrane	41.93	48.07
GSMUA_AchrUn_...	Banana	peroxisome	42.38	47.61
GSMUA_Achr10P...	Banana	plasma membrane	45.96	47.45
GSMUA_Achr8P30930_001	Banana	endoplasmic reticulum, extracellular	40.36	46.63
GSMUA_Achr5P05870_001	Banana	plasma membrane	43.5	46.19
GSMUA_Achr2P08980_001	Banana	golgi, peroxisome, plasma membrane	47.76	46.1
GSMUA_Achr7P08410_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	39.91	45.52
GSMUA_Achr1P02540_001	Banana	cytosol	43.27	45.52
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	49.1	44.88
GSMUA_Achr6P23320_001	Banana	endoplasmic reticulum, golgi, vacuole	36.32	40.6

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	EnsemblPlantsGene:GSMUA_Achr10G17420_001	EnsemblPlants:GSMUA_Achr10P17420_001	EnsemblPlants:GSMUA_Achr10T17420_001
InterPro:IPR016039	UniProt:M0RJ17	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561
PANTHER:PTHR31561:SF2	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000295C703	SEG:seg

Description

3-ketoacyl-CoA synthase 10 [Source:GMGC_GENE;Acc:GSMUA_Achr10G17420_001]

Coordinates

chr10:-:24650114..24651861

Molecular Weight (calculated)

50340.7 Da

IEP (calculated)

9.288

GRAVY (calculated)

-0.149

Length

446 amino acids

Sequence
(BLAST)

001: MAGEHALLSA EISVNLNYVK LGYRNLVGHA VYWATVPLLA VVGSLSREAL WRKAWEETSY DLATQLAFLV ALAFTVAVYF MWKPRPIYLL DFACYRPSDD
101: LKVSNEEFIE LARKSGKFNE ESLAFQSRIL KSSGIGDETY VPKSIFSPGN CATMTEGRAE ASTAMISALD ELFDKCRVRP KDIGILVVNC SLFNPTPSLS
201: AMILNHYKMR SNILSYNLGG MGCSAGVIAL DLARDMLRAN PSSYAVVVST EAVSFTWYTG RNRSMLIPNC FFRMGCSAVL LSNRRRDFRR AKYRLEHIVR
301: THKGGDGRSF RCVYQEEDEE RKKCLCISRD LMEVGGHALK AHITTFAPRV IPFSEQLLFN LRLEDRHMEA SLATLHRFGN TSSSSIWYEL AYLEAKGRVR
401: GGDRVWQIAF GSGFKCNSAV WKATRRVRRP NRSPWLDCVD RYPEGG

Best Arabidopsis Sequence Match ( AT2G26250.1 )
(BLAST)

001: MGRSNEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSREEIWKK LWDYDLATVI
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL

Arabidopsis Description

FDH3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VYA3]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.