Factsheet for GSMUA_Achr6P23320_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

plastid 1
mitochondrion 1
endoplasmic reticulum 4
cytosol 1
extracellular 3
vacuole 4
plasma membrane 3
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	plasma membrane	56.39	52.08
GSMUA_AchrUn_...	Banana	peroxisome	50.88	51.13
GSMUA_Achr7P08410_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	49.12	50.13
TraesCS6B01G473900.1	Wheat	mitochondrion	59.65	47.22
GSMUA_Achr3P07400_001	Banana	plasma membrane	45.86	47.04
TraesCS6A01G415500.2	Wheat	mitochondrion	58.9	46.53
TraesCS4A01G025300.1	Wheat	golgi	59.15	46.37
TraesCS4D01G277300.1	Wheat	golgi	58.9	46.17
TraesCS4B01G278800.1	Wheat	golgi	58.9	46.08
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi, plasma membrane	51.13	46.05
HORVU4Hr1G073840.2	Barley	golgi	58.65	45.97
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	56.14	45.9
Zm00001d032948_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	56.14	45.25
GSMUA_Achr5P05870_001	Banana	plasma membrane	47.62	45.24
GSMUA_Achr2P08980_001	Banana	golgi, peroxisome, plasma membrane	51.88	44.81
EER95458	Sorghum	mitochondrion	59.4	44.8
GSMUA_Achr6P27270_001	Banana	cytosol, peroxisome, plasma membrane	47.37	44.79
GSMUA_Achr8P30930_001	Banana	endoplasmic reticulum, extracellular	43.11	44.56
Zm00001d014168_P001	Maize	peroxisome, plasma membrane, plastid	55.89	44.16
TraesCS1B01G387800.2	Wheat	plasma membrane	55.39	44.11
GSMUA_Achr3P02180_001	Banana	plasma membrane	38.85	43.91
Os10t0416200-01	Rice	cytosol, mitochondrion	57.39	43.79
TraesCS1A01G369100.1	Wheat	golgi	54.89	43.45
GSMUA_Achr9P06980_001	Banana	cytosol, golgi, peroxisome	51.13	43.31
TraesCS1D01G374700.1	Wheat	plasma membrane	54.89	43.2
EER91618	Sorghum	plastid	56.64	43.13
GSMUA_Achr5P09090_001	Banana	golgi, peroxisome, plasma membrane	45.11	42.96
GSMUA_Achr2P21590_001	Banana	golgi, peroxisome, plastid	41.35	42.75
HORVU7Hr1G023530.2	Barley	endoplasmic reticulum, extracellular	50.88	41.86
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	46.62	41.7
Zm00001d027766_P001	Maize	mitochondrion	54.89	41.4
GSMUA_Achr1P02540_001	Banana	cytosol	42.11	39.62
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	48.12	39.43
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	40.6	36.32

Protein Annotations

KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:Chalcone/stilbene_synth_C	InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0016747
EnsemblPlantsGene:GSMUA_Achr6G23320_001	EnsemblPlants:GSMUA_Achr6P23320_001	EnsemblPlants:GSMUA_Achr6T23320_001	InterPro:IPR016039	UniProt:M0T9I0	PFAM:PF02797
PFAM:PF08392	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF65	SUPFAM:SSF53901	TMHMM:TMhelix
InterPro:Thiolase-like	UniParc:UPI000294B1DD	SEG:seg	:	:	:

Description

3-ketoacyl-CoA synthase 11 [Source:GMGC_GENE;Acc:GSMUA_Achr6G23320_001]

Coordinates

chr6:-:23461982..23464667

Molecular Weight (calculated)

44872.7 Da

IEP (calculated)

8.584

GRAVY (calculated)

-0.042

Length

399 amino acids

Sequence
(BLAST)

001: MLRPTHMKLL YHHVISHALY LCLGPLLVLH LPRLSISMQS DLRELAEQPC RPRPVYLVDV YCYKPSEAYM GARSMIIKQF ESSGAFASDT AEMVVFGAVD
101: ELFRTTGLKA KDVRILVVNC STYNPTPSYT AMIVNRYKLR GDVISYNLGG MGCSAGLVSI DLAKNLLQVH PNSYALVVST ENITVNAYFG NNRSMLLSNS
201: LFRVGAAALL LSNIRSDRRR SKYQLLHTVR GNKAADDCSY SCVLQEEDAD GKIGIALSKE LMAVAGDALK ENITTLGPLV LPMSEQLLFL AAVIMKKVFK
301: FKINSYVPDF KLAFEHFCIH AGGRAVLDEL EKNLHLTEWH MEPSRMTLYR FGNTSSSSLW YELSYCEAKR RIRKDDRNPW IDEIDKFPVQ VPKEAPLTP

Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)

001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ

Arabidopsis Description

KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.