Factsheet for GSMUA_Achr2P21590_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plastid

Predictor Summary:

nucleus 1
mitochondrion 1
peroxisome 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P02180_001	Banana	plasma membrane	75.39	82.44
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi, plasma membrane	85.49	74.49
GSMUA_Achr8P30930_001	Banana	endoplasmic reticulum, extracellular	68.39	68.39
Os03t0220100-01	Rice	golgi, mitochondrion	84.2	65.79
EER92628	Sorghum	plasma membrane	83.16	64.98
Zm00001d028241_P003	Maize	endoplasmic reticulum, golgi, plasma membrane	82.9	64.78
GSMUA_Achr3P07400_001	Banana	plasma membrane	65.03	64.52
TraesCS4D01G242200.1	Wheat	mitochondrion, plasma membrane	82.64	64.31
TraesCS4A01G065300.1	Wheat	mitochondrion, plasma membrane	81.87	63.71
VIT_14s0006g02990.t01	Wine grape	plasma membrane	80.57	63.21
Zm00001d048061_P001	Maize	golgi	80.57	62.96
HORVU4Hr1G067340.2	Barley	golgi	81.61	62.87
KRH35956	Soybean	plasma membrane	79.79	62.1
Solyc02g085870.2.1	Tomato	plasma membrane	79.27	61.69
KRG90814	Soybean	cytosol, golgi, plasma membrane	79.27	61.69
AT1G68530.1	Thale cress	plasma membrane	79.02	61.37
PGSC0003DMT400032993	Potato	plasma membrane	78.76	61.29
PGSC0003DMT400062136	Potato	cytosol, golgi, plasma membrane	78.24	60.89
AT1G25450.1	Thale cress	plasma membrane	77.46	60.77
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	77.98	60.69
Bra004034.1-P	Field mustard	plasma membrane	77.2	60.57
CDY04232	Canola	plasma membrane	77.98	60.56
CDY07381	Canola	plasma membrane	77.72	60.36
Solyc02g063140.2.1	Tomato	golgi	77.2	60.08
Bra024749.1-P	Field mustard	plasma membrane	76.94	59.76
CDY42109	Canola	plasma membrane	76.94	59.76
KRH45255	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	76.68	59.68
GSMUA_Achr5P05870_001	Banana	plasma membrane	62.44	57.38
PGSC0003DMT400037714	Potato	plasma membrane	72.54	56.68
PGSC0003DMT400037757	Potato	plastid	67.62	56.62
Solyc05g009270.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	70.21	54.86
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	69.17	54.27
GSMUA_Achr5P09090_001	Banana	golgi, peroxisome, plasma membrane	57.25	52.74
Solyc05g009280.2.1	Tomato	golgi, plasma membrane, plastid	70.47	52.41
GSMUA_Achr6P27270_001	Banana	cytosol, peroxisome, plasma membrane	57.25	52.37
GSMUA_Achr2P08980_001	Banana	golgi, peroxisome, plasma membrane	61.14	51.08
GSMUA_Achr9P06980_001	Banana	cytosol, golgi, peroxisome	59.84	49.04
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	53.89	46.64
GSMUA_AchrUn_...	Banana	peroxisome	45.85	44.58
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	55.18	43.74
GSMUA_Achr1P02540_001	Banana	cytosol	47.67	43.4
GSMUA_Achr7P08410_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	43.01	42.46
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	48.96	42.38
GSMUA_Achr10P...	Banana	plasma membrane	47.15	42.13
GSMUA_Achr6P23320_001	Banana	endoplasmic reticulum, golgi, vacuole	42.75	41.35
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	51.04	40.37

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016747	EnsemblPlantsGene:GSMUA_Achr2G21590_001	EnsemblPlants:GSMUA_Achr2P21590_001	EnsemblPlants:GSMUA_Achr2T21590_001	InterPro:IPR016039
UniProt:M0SA00	PFAM:PF08392	PFAM:PF08541	PANTHER:PTHR31561	PANTHER:PTHR31561:SF5	SUPFAM:SSF53901
TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0002968855	:	:	:

Description

3-ketoacyl-CoA synthase 6 [Source:GMGC_GENE;Acc:GSMUA_Achr2G21590_001]

Coordinates

chr2:-:20995840..20997484

Molecular Weight (calculated)

43600.3 Da

IEP (calculated)

9.241

GRAVY (calculated)

-0.017

Length

386 amino acids

Sequence
(BLAST)

001: MPRAPLPEFS SSVRLKYVKL GYQHLVDNFV TFLSIPVMLD VIHILCSVFV IIFVATVYFM SRPRPVYLVE YACFKPPSNC RVPFSTFMEH TRLINSDEKS
101: VQFQMRILER SGLGEETCLP PANHYIPPHP TMEASRAEAQ LVIFSAIDDL IRKTGLKPKD IDILVVNCSL FSPTPAGLIS IDLARDLLQV HPGSNALVIS
201: TEIITPNFYA GNQRAMLLPN CLFRMGAAAI LLSNRRRDAG RAKYRLVHVV RTHKGADDRA YRCSNITTIG PLKAFEHLCI HAGGRAVIDE LQKNLELSAE
301: HVEASRMTLH RFGNTSSSSL WYELNYIESK GRMRRGDRVW QIGFGSGFKC NSAVWKCMRT VKTPIDGPWS ECIHRYPVHI PEVVKL

Best Arabidopsis Sequence Match ( AT1G68530.1 )
(BLAST)

001: MPQAPMPEFS SSVKLKYVKL GYQYLVNHFL SFLLIPIMAI VAVELLRMGP EEILNVWNSL QFDLVQVLCS SFFVIFISTV YFMSKPRTIY LVDYSCYKPP
101: VTCRVPFATF MEHSRLILKD KPKSVEFQMR ILERSGLGEE TCLPPAIHYI PPTPTMDAAR SEAQMVIFEA MDDLFKKTGL KPKDVDILIV NCSLFSPTPS
201: LSAMVINKYK LRSNIKSFNL SGMGCSAGLI SVDLARDLLQ VHPNSNAIIV STEIITPNYY QGNERAMLLP NCLFRMGAAA IHMSNRRSDR WRAKYKLSHL
301: VRTHRGADDK SFYCVYEQED KEGHVGINLS KDLMAIAGEA LKANITTIGP LVLPASEQLL FLTSLIGRKI FNPKWKPYIP DFKLAFEHFC IHAGGRAVID
401: ELQKNLQLSG EHVEASRMTL HRFGNTSSSS LWYELSYIES KGRMRRGDRV WQIAFGSGFK CNSAVWKCNR TIKTPKDGPW SDCIDRYPVF IPEVVKL

Arabidopsis Description

CUT13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178WCX7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.