Factsheet for GSMUA_Achr10P18000_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
endoplasmic reticulum 2
cytosol 1
extracellular 1
vacuole 1
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P21590_001	Banana	golgi, peroxisome, plastid	74.49	85.49
GSMUA_Achr3P02180_001	Banana	plasma membrane	63.88	80.17
GSMUA_Achr8P30930_001	Banana	endoplasmic reticulum, extracellular	64.56	74.09
Os03t0220100-01	Rice	golgi, mitochondrion	82.62	74.09
EER92628	Sorghum	plasma membrane	81.49	73.08
Zm00001d028241_P003	Maize	endoplasmic reticulum, golgi, plasma membrane	81.04	72.67
TraesCS4A01G065300.1	Wheat	mitochondrion, plasma membrane	81.26	72.58
TraesCS4D01G242200.1	Wheat	mitochondrion, plasma membrane	81.04	72.38
HORVU4Hr1G067340.2	Barley	golgi	80.81	71.46
VIT_14s0006g02990.t01	Wine grape	plasma membrane	78.78	70.94
GSMUA_Achr3P07400_001	Banana	plasma membrane	62.08	70.69
KRH35956	Soybean	plasma membrane	78.33	69.96
AT1G68530.1	Thale cress	plasma membrane	78.33	69.82
KRG90814	Soybean	cytosol, golgi, plasma membrane	77.88	69.56
Zm00001d048061_P001	Maize	golgi	77.43	69.43
Bra004034.1-P	Field mustard	plasma membrane	76.52	68.9
CDY04232	Canola	plasma membrane	77.2	68.81
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	76.98	68.75
CDY07381	Canola	plasma membrane	76.98	68.61
Solyc02g085870.2.1	Tomato	plasma membrane	75.85	67.74
PGSC0003DMT400032993	Potato	plasma membrane	75.85	67.74
KRH45255	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	75.39	67.34
Bra024749.1-P	Field mustard	plasma membrane	75.39	67.2
CDY42109	Canola	plasma membrane	75.39	67.2
AT1G25450.1	Thale cress	plasma membrane	74.27	66.87
PGSC0003DMT400062136	Potato	cytosol, golgi, plasma membrane	74.27	66.33
Solyc02g063140.2.1	Tomato	golgi	74.04	66.13
PGSC0003DMT400037714	Potato	plasma membrane	72.01	64.57
GSMUA_Achr5P05870_001	Banana	plasma membrane	60.72	64.05
PGSC0003DMT400037757	Potato	plastid	66.37	63.77
Solyc05g009270.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	71.11	63.77
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	68.4	61.59
Solyc05g009280.2.1	Tomato	golgi, plasma membrane, plastid	69.53	59.34
GSMUA_Achr5P09090_001	Banana	golgi, peroxisome, plasma membrane	55.08	58.23
GSMUA_Achr6P27270_001	Banana	cytosol, peroxisome, plasma membrane	55.08	57.82
GSMUA_Achr9P06980_001	Banana	cytosol, golgi, peroxisome	60.95	57.32
GSMUA_Achr2P08980_001	Banana	golgi, peroxisome, plasma membrane	59.14	56.71
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	55.53	55.16
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	57.34	52.16
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	51.92	51.57
GSMUA_Achr6P23320_001	Banana	endoplasmic reticulum, golgi, vacuole	46.05	51.13
GSMUA_Achr10P...	Banana	plasma membrane	49.66	50.93
GSMUA_AchrUn_...	Banana	peroxisome	45.15	50.38
GSMUA_Achr1P02540_001	Banana	cytosol	47.63	49.76
GSMUA_Achr7P08410_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	42.66	48.34
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	52.14	47.34

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	EnsemblPlantsGene:GSMUA_Achr10G18000_001	EnsemblPlants:GSMUA_Achr10P18000_001	EnsemblPlants:GSMUA_Achr10T18000_001
InterPro:IPR016039	UniProt:M0RJ75	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561
PANTHER:PTHR31561:SF5	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0002957943	SEG:seg

Description

3-ketoacyl-CoA synthase 6 [Source:GMGC_GENE;Acc:GSMUA_Achr10G18000_001]

Coordinates

chr10:+:24945926..24947569

Molecular Weight (calculated)

49643.5 Da

IEP (calculated)

9.109

GRAVY (calculated)

0.051

Length

443 amino acids

Sequence
(BLAST)

001: MPRAPFPELS SSVRLKYVKL GYQCLVNNFV AFLLIPVMIA VPLVLVLFSV FLLVFVAAVY FVSRPRPVYL VDYACFKPPT TCRVPSATFM EHAWLINWDE
101: KSVQFQTRIL ERSGLGEETC LPPASHYIPP NPTMEAARAE AQLVIFSAID DLFKKTGLRP KNIDILVVNC SLFSPTPSLS SMIINKYELR SNIRSFNLSG
201: MGCSAGLISI DLARDLLQVH PRSNALVIST EIITPNSYTG NQRSMLLPNC LFRMGAAAIL LSNRRRDARR AKYRLLHVVR THKGADDRAY RCVYQEEDAE
301: GHTGISLSKN LMAIAGEALK SNITTIGPLL AFEHFCIHAG GRAVIDELQN NLQLTAEHVE ASRMTLHRFG NTSSSSLWYE LSYIESKGRM RRGHRVWQIG
401: FGSGFKCNSA VWKCLRTVET LVDGPWADCI NRYPVDIPDV VKP

Best Arabidopsis Sequence Match ( AT1G68530.1 )
(BLAST)

001: MPQAPMPEFS SSVKLKYVKL GYQYLVNHFL SFLLIPIMAI VAVELLRMGP EEILNVWNSL QFDLVQVLCS SFFVIFISTV YFMSKPRTIY LVDYSCYKPP
101: VTCRVPFATF MEHSRLILKD KPKSVEFQMR ILERSGLGEE TCLPPAIHYI PPTPTMDAAR SEAQMVIFEA MDDLFKKTGL KPKDVDILIV NCSLFSPTPS
201: LSAMVINKYK LRSNIKSFNL SGMGCSAGLI SVDLARDLLQ VHPNSNAIIV STEIITPNYY QGNERAMLLP NCLFRMGAAA IHMSNRRSDR WRAKYKLSHL
301: VRTHRGADDK SFYCVYEQED KEGHVGINLS KDLMAIAGEA LKANITTIGP LVLPASEQLL FLTSLIGRKI FNPKWKPYIP DFKLAFEHFC IHAGGRAVID
401: ELQKNLQLSG EHVEASRMTL HRFGNTSSSS LWYELSYIES KGRMRRGDRV WQIAFGSGFK CNSAVWKCNR TIKTPKDGPW SDCIDRYPVF IPEVVKL

Arabidopsis Description

CUT13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178WCX7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.