Factsheet for GSMUA_Achr3P02180_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P21590_001	Banana	golgi, peroxisome, plastid	82.44	75.39
GSMUA_Achr8P30930_001	Banana	endoplasmic reticulum, extracellular	70.82	64.77
GSMUA_Achr3P07400_001	Banana	plasma membrane	70.54	64.01
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi, plasma membrane	80.17	63.88
Os03t0220100-01	Rice	golgi, mitochondrion	84.7	60.53
EER92628	Sorghum	plasma membrane	83.85	59.92
Zm00001d028241_P003	Maize	endoplasmic reticulum, golgi, plasma membrane	83.57	59.72
Zm00001d048061_P001	Maize	golgi	81.3	58.1
TraesCS4D01G242200.1	Wheat	mitochondrion, plasma membrane	81.59	58.06
KRH35956	Soybean	plasma membrane	81.59	58.06
HORVU4Hr1G067340.2	Barley	golgi	81.59	57.48
TraesCS4A01G065300.1	Wheat	mitochondrion, plasma membrane	80.45	57.26
KRG90814	Soybean	cytosol, golgi, plasma membrane	79.6	56.65
AT1G68530.1	Thale cress	plasma membrane	79.32	56.34
CDY04232	Canola	plasma membrane	79.32	56.34
VIT_14s0006g02990.t01	Wine grape	plasma membrane	78.47	56.3
Bra004034.1-P	Field mustard	plasma membrane	77.9	55.89
CDY07381	Canola	plasma membrane	78.47	55.73
GSMUA_Achr5P05870_001	Banana	plasma membrane	66.29	55.71
Solyc02g085870.2.1	Tomato	plasma membrane	78.19	55.65
PGSC0003DMT400032993	Potato	plasma membrane	77.9	55.44
AT1G25450.1	Thale cress	plasma membrane	77.05	55.28
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	77.34	55.04
Bra024749.1-P	Field mustard	plasma membrane	77.05	54.73
CDY42109	Canola	plasma membrane	77.05	54.73
KRH45255	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	75.92	54.03
PGSC0003DMT400062136	Potato	cytosol, golgi, plasma membrane	75.64	53.83
Solyc02g063140.2.1	Tomato	golgi	75.64	53.83
PGSC0003DMT400037714	Potato	plasma membrane	72.24	51.62
GSMUA_Achr5P09090_001	Banana	golgi, peroxisome, plasma membrane	60.34	50.84
PGSC0003DMT400037757	Potato	plastid	65.72	50.33
Solyc05g009270.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	69.69	49.8
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	67.42	48.37
GSMUA_Achr2P08980_001	Banana	golgi, peroxisome, plasma membrane	62.89	48.05
Solyc05g009280.2.1	Tomato	golgi, plasma membrane, plastid	69.69	47.4
GSMUA_Achr6P27270_001	Banana	cytosol, peroxisome, plasma membrane	55.81	46.68
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	56.37	44.62
GSMUA_AchrUn_...	Banana	peroxisome	50.14	44.58
GSMUA_Achr7P08410_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	48.73	43.99
GSMUA_Achr9P06980_001	Banana	cytosol, golgi, peroxisome	57.51	43.1
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	57.22	41.48
GSMUA_Achr10P...	Banana	plasma membrane	50.42	41.2
GSMUA_Achr1P02540_001	Banana	cytosol	49.29	41.04
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	50.14	39.69
GSMUA_Achr6P23320_001	Banana	endoplasmic reticulum, golgi, vacuole	43.91	38.85
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	48.44	35.04

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016747	EnsemblPlantsGene:GSMUA_Achr3G02180_001	EnsemblPlants:GSMUA_Achr3P02180_001	EnsemblPlants:GSMUA_Achr3T02180_001	InterPro:IPR016039
UniProt:M0SB36	PFAM:PF08392	PFAM:PF08541	PANTHER:PTHR31561	PANTHER:PTHR31561:SF5	SUPFAM:SSF53901
TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0002951428	SEG:seg	:	:

Description

3-ketoacyl-CoA synthase 6 [Source:GMGC_GENE;Acc:GSMUA_Achr3G02180_001]

Coordinates

chr3:+:1448893..1450383

Molecular Weight (calculated)

40257.3 Da

IEP (calculated)

9.589

GRAVY (calculated)

0.039

Length

353 amino acids

Sequence
(BLAST)

001: MPRAPLPEFS SSVKLKYVKL GYQYLVNNFV TLLLIPVMAA VYLELVRMGP EEIMGLWRSL RLDLIQILCS FFVIIFAATV YLTSRPQPVY LVDYACFKPP
101: TTCRVPFSTF MEHTRLISSD EKSVRFQMRI LERPKDIDIL VVNCSLFSPT PSLSAMIINN SNALVVSTEI ITPNFYAGNQ RSMLLPNCLF RMGAAAILLS
201: NRRRDARRAK YRLVHVVRTH KGADDRAYRC SNITTIGPLL AFEHFCIHAG GRAVIDELQK NLELSAEHVE ASRMTLHRFG NTSSSSLWYE LNYIESKGRM
301: RRGDRVWQIG FGSGFKCNSA VWKCLRTVKT PVDGPWSDCI DRYPVDIPEI VRL

Best Arabidopsis Sequence Match ( AT1G19440.1 )
(BLAST)

001: MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY

Arabidopsis Description

KCS43-ketoacyl-CoA synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN49]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.