Factsheet for GSMUA_Achr6P11690_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	83.37	91.03
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	75.56	82.51
Os03t0181500-01	Rice	plasma membrane	80.7	72.51
TraesCS4A01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	80.29	72.41
TraesCS4D01G296400.1	Wheat	cytosol, peroxisome, plasma membrane	80.08	72.22
TraesCS4B01G297500.1	Wheat	golgi	80.08	72.22
EER95395	Sorghum	cytosol, peroxisome, plasma membrane	80.29	72.01
Zm00001d027904_P001	Maize	plastid	80.08	71.82
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	76.8	70.57
CDX77038	Canola	cytosol, endoplasmic reticulum, plasma membrane	76.59	70.11
HORVU4Hr1G076940.1	Barley	mitochondrion, peroxisome, plastid	63.04	70.09
KRH61616	Soybean	nucleus	76.8	69.78
KRH52284	Soybean	nucleus	76.59	69.72
PGSC0003DMT400019063	Potato	cytosol, peroxisome, plasma membrane	75.98	68.52
Bra034298.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	73.72	68.38
Bra007766.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	76.8	68.37
CDY35309	Canola	cytosol, endoplasmic reticulum, plasma membrane	77.0	68.31
CDY11498	Canola	endoplasmic reticulum, peroxisome, plasma membrane	76.8	68.25
CDX76724	Canola	cytosol, endoplasmic reticulum, plasma membrane	76.39	68.01
AT2G26250.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	76.18	67.45
Solyc08g067260.2.1	Tomato	cytosol, peroxisome, plasma membrane	69.82	67.19
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi, plasma membrane	52.16	57.34
GSMUA_Achr3P02180_001	Banana	plasma membrane	41.48	57.22
GSMUA_Achr2P08980_001	Banana	golgi, peroxisome, plasma membrane	52.77	55.63
GSMUA_Achr6P27270_001	Banana	cytosol, peroxisome, plasma membrane	48.05	55.45
GSMUA_Achr5P09090_001	Banana	golgi, peroxisome, plasma membrane	47.64	55.37
GSMUA_Achr2P21590_001	Banana	golgi, peroxisome, plastid	43.74	55.18
GSMUA_Achr9P06980_001	Banana	cytosol, golgi, peroxisome	53.18	54.99
GSMUA_Achr3P07400_001	Banana	plasma membrane	43.53	54.5
GSMUA_Achr10P...	Banana	plasma membrane	45.38	51.16
GSMUA_Achr5P05870_001	Banana	plasma membrane	43.94	50.95
GSMUA_AchrUn_...	Banana	peroxisome	41.48	50.88
GSMUA_Achr1P02540_001	Banana	cytosol	43.74	50.24
GSMUA_Achr7P08410_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	39.22	48.85
GSMUA_Achr8P30930_001	Banana	endoplasmic reticulum, extracellular	38.6	48.7
GSMUA_Achr6P23320_001	Banana	endoplasmic reticulum, golgi, vacuole	39.43	48.12
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	47.23	47.13

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
ncoils:Coil	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	EnsemblPlantsGene:GSMUA_Achr6G11690_001	EnsemblPlants:GSMUA_Achr6P11690_001
EnsemblPlants:GSMUA_Achr6T11690_001	InterPro:IPR016039	UniProt:M0T667	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF2	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000296E653

Description

3-ketoacyl-CoA synthase 10 [Source:GMGC_GENE;Acc:GSMUA_Achr6G11690_001]

Coordinates

chr6:+:7739668..7742095

Molecular Weight (calculated)

54800.8 Da

IEP (calculated)

9.335

GRAVY (calculated)

-0.232

Length

487 amino acids

Sequence
(BLAST)

001: MSGEHTLLST EIVNRGIEAS GPDAGSPTFS VRVRRRLPDF LQSVNLKYVK LGYHYLISHA ELWRKMWEET SYDLATVLAF FSVLAFTIAV YFMSKPRPIY
101: LVDFACYRPS DDLKASNAEF IEMARKSGKF DEESLSFQSR ILKSSGIGDE TYVPKSVFST GNCATMKEGR AEASMAMFSA LDELFEKCRV RPKDVGVLVV
201: NCSLFNPTPS LSAMIVNHYK MRGNILSYNL GGMGCSAGII ALDLARDMLQ ANPSSYAVVV STEAVSFTWY TGRNRSMLIP NCFFRMGCSA VLLSNRRRDF
301: RRAKYRLEHI VRTHKGADDR SFRCVYQEED DQRIKGLSIS RDLMEVGGHA LKANITTLGP LPADSANAAA TKPYIPDYKL AFEHFCIHAA SKAVLDALQN
401: NLELEDRHME ASRAALHRFG NTSSSSIWYE LAYLEAKGRV RGGDRVWQIA FGSGFKCNSA VWKAMRRVRR PNRNPWLDCV DRYPVGR

Best Arabidopsis Sequence Match ( AT2G26250.1 )
(BLAST)

001: MGRSNEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSREEIWKK LWDYDLATVI
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL

Arabidopsis Description

FDH3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VYA3]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.