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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome

Predictor Summary:
  • nucleus 1
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, peroxisome, plasma membrane
Any Predictor:endoplasmic reticulum, nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra007766.1-P Field mustard endoplasmic reticulum, peroxisome, plasma membrane 99.45 99.63
CDX76724 Canola cytosol, endoplasmic reticulum, plasma membrane 97.45 97.62
CDX77038 Canola cytosol, endoplasmic reticulum, plasma membrane 93.07 95.86
CDY35309 Canola cytosol, endoplasmic reticulum, plasma membrane 95.8 95.63
AT2G26250.1 Thale cress cytosol, endoplasmic reticulum, plasma membrane 95.26 94.91
KRH61616 Soybean nucleus 75.73 77.43
KRH52284 Soybean nucleus 75.55 77.38
VIT_04s0008g02250.t01 Wine grape endoplasmic reticulum, peroxisome, plasma membrane 74.45 76.98
GSMUA_Achr6P11690_001 Banana cytosol, peroxisome, plastid 68.25 76.8
GSMUA_Achr3P02010_001 Banana golgi, peroxisome, plastid 61.31 75.34
Solyc08g067260.2.1 Tomato cytosol, peroxisome, plasma membrane 68.43 74.11
PGSC0003DMT400019063 Potato cytosol, peroxisome, plasma membrane 72.81 73.89
EER95395 Sorghum cytosol, peroxisome, plasma membrane 70.07 70.72
Os03t0181500-01 Rice plasma membrane 69.89 70.66
Zm00001d027904_P001 Maize plastid 69.89 70.53
TraesCS4B01G297500.1 Wheat golgi 69.34 70.37
TraesCS4D01G296400.1 Wheat cytosol, peroxisome, plasma membrane 69.34 70.37
TraesCS4A01G007400.1 Wheat cytosol, peroxisome, plasma membrane 69.16 70.19
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, plastid 56.57 69.51
HORVU4Hr1G076940.1 Barley mitochondrion, peroxisome, plastid 53.28 66.67
CDX89699 Canola cytosol 37.04 62.46
CDY47458 Canola cytosol 5.66 62.0
CDY15199 Canola cytosol 37.96 61.18
CDX94721 Canola cytosol 43.61 60.35
CDY21665 Canola plasma membrane 53.47 57.45
CDY10355 Canola cytosol 27.01 57.36
CDX81929 Canola plasma membrane 53.28 57.25
CDY63070 Canola cytosol 38.32 57.07
CDY29431 Canola plasma membrane 50.18 56.82
CDX70186 Canola plastid 53.1 56.73
CDY46243 Canola golgi 48.91 56.54
CDX76286 Canola golgi 48.72 56.33
CDX98800 Canola plastid 52.37 55.41
CDY26665 Canola cytosol, peroxisome, plasma membrane 50.0 55.35
CDX71278 Canola cytosol, peroxisome, plasma membrane 50.91 55.03
CDY07381 Canola plasma membrane 49.82 54.93
CDY04232 Canola plasma membrane 49.63 54.73
CDY46211 Canola cytosol, peroxisome, plasma membrane 50.55 54.64
CDY14892 Canola endoplasmic reticulum, golgi, plastid 52.19 54.37
CDX89834 Canola plasma membrane 51.64 54.32
CDX96912 Canola endoplasmic reticulum, golgi, plastid 52.01 54.08
CDY18212 Canola plasma membrane 51.64 53.5
CDY47457 Canola cytosol, endoplasmic reticulum, plasma membrane 37.77 53.21
CDY42109 Canola plasma membrane 46.9 51.71
CDX89700 Canola endoplasmic reticulum, golgi, plasma membrane 39.96 50.81
CDX90012 Canola cytosol 48.54 50.28
CDY37475 Canola plasma membrane 43.61 50.0
CDY32443 Canola plasma membrane 43.61 50.0
CDY02266 Canola endoplasmic reticulum, golgi, plasma membrane 39.96 49.21
CDX69040 Canola cytosol, endoplasmic reticulum, plasma membrane, plastid 41.24 48.71
CDY26762 Canola endoplasmic reticulum, peroxisome, plasma membrane 41.79 48.52
CDX75415 Canola cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 40.88 48.28
CDX71202 Canola endoplasmic reticulum, golgi, plasma membrane 41.61 47.8
CDY17465 Canola plasma membrane 40.88 47.16
CDX72475 Canola endoplasmic reticulum, golgi 35.95 46.57
CDY49290 Canola endoplasmic reticulum, golgi 35.04 45.39
CDX76287 Canola endoplasmic reticulum, golgi, plasma membrane 41.79 45.26
CDY37951 Canola endoplasmic reticulum, plasma membrane 35.4 43.21
CDY66107 Canola endoplasmic reticulum, plasma membrane, plastid 34.85 42.54
CDY49219 Canola endoplasmic reticulum, plasma membrane 34.85 42.16
CDY33931 Canola plastid 35.04 42.01
CDY05644 Canola plasma membrane, plastid, vacuole 35.04 42.01
CDX68323 Canola endoplasmic reticulum, golgi 34.49 41.91
CDY41551 Canola golgi 40.88 35.61
CDX80041 Canola endoplasmic reticulum, golgi, plasma membrane 41.24 35.48
CDY49218 Canola plasma membrane 0.36 0.7
Protein Annotations
KEGG:00061+2.3.1.180KEGG:00062+2.3.1.199KEGG:00650+2.3.1.19InterPro:3-ktacl-CoA_synMapMan:5.1.6.1.1GO:A0A078FHD7
UniProt:A0A078FHD7InterPro:ACP_syn_III_CEnsemblPlants:CDY11498ProteinID:CDY11498ProteinID:CDY11498.1ncoils:Coil
InterPro:FAE1_typ3_polyketide_synthGO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0006629GO:GO:0006633
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0016740GO:GO:0016746GO:GO:0016747EnsemblPlantsGene:GSBRNA2T00049578001InterPro:IPR016039PFAM:PF08392
PFAM:PF08541PIRSF:PIRSF036417PANTHER:PTHR31561PANTHER:PTHR31561:SF2MetaCyc:PWY-4381MetaCyc:PWY-5080
MetaCyc:PWY-5972MetaCyc:PWY-6433MetaCyc:PWY-6598MetaCyc:PWY-7036MetaCyc:PWY-7601MetaCyc:PWY-7602
MetaCyc:PWY-7619MetaCyc:PWY-7724MetaCyc:PWY-7725SUPFAM:SSF53901TMHMM:TMhelixInterPro:Thiolase-like
UniPathway:UPA00094UniParc:UPI0004EF0D98SEG:seg:::
Description
BnaA09g40640D3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A078FHD7]
Coordinates
chrLK032011:+:701079..703618
Molecular Weight (calculated)
61526.0 Da
IEP (calculated)
9.253
GRAVY (calculated)
-0.169
Length
548 amino acids
Sequence
(BLAST)
001: MGSSNEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFGAEVG SLSREEIWNK LWDYDIATVI
101: GFFGVFVLTV CVYFMSRPRS VYLIDFACYK PSDELKVTRE EFIDLARKSG KFDEETLGFK KRILQASGLG DETYVPRSIS SSDNITTMKE GREEASMVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIALDLARDM LQSSNPNSYA VVVSTEMVGY NWYVGRDKSM
301: VIPNCFFRMG CSAVMLSNRR RDFRHAKYRL EHIVRTHKAA DDRSFRSVYQ EEDEQGFKGL KISRDLMEVG GEALKTNITT LGPLVLPFSE QLLFFAALLR
401: RTFSPAAKTV TSSSTTAKTN GAKSSSSSDL SKPYIPDYKL AFEHFCFHAA SKAVLDELQK NLGLSEENME ASRMTLQRFG NTSSSGIWYE LAYLEAKESV
501: RRGDRVWQIA FGSGFKCNSV VWKAMRKVKK PARNNPWVDC ISRYPVAL
Best Arabidopsis Sequence Match ( AT2G26250.1 )
(BLAST)
001: MGRSNEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSREEIWKK LWDYDLATVI
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL
Arabidopsis Description
FDH3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VYA3]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.