CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

plastid 1
endoplasmic reticulum 1
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, endoplasmic reticulum, plastid
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034298.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	95.45	99.81
CDX77038	Canola	cytosol, endoplasmic reticulum, plasma membrane	95.63	98.68
CDY11498	Canola	endoplasmic reticulum, peroxisome, plasma membrane	95.63	95.8
AT2G26250.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	95.81	95.64
CDX76724	Canola	cytosol, endoplasmic reticulum, plasma membrane	94.35	94.7
KRH61616	Soybean	nucleus	76.14	77.99
KRH52284	Soybean	nucleus	75.96	77.94
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	75.05	77.74
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	68.31	77.0
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	61.2	75.34
Solyc08g067260.2.1	Tomato	cytosol, peroxisome, plasma membrane	68.31	74.11
PGSC0003DMT400019063	Potato	cytosol, peroxisome, plasma membrane	72.68	73.89
TraesCS4D01G296400.1	Wheat	cytosol, peroxisome, plasma membrane	69.76	70.93
TraesCS4B01G297500.1	Wheat	golgi	69.76	70.93
Zm00001d027904_P001	Maize	plastid	70.13	70.9
EER95395	Sorghum	cytosol, peroxisome, plasma membrane	70.13	70.9
Os03t0181500-01	Rice	plasma membrane	69.95	70.85
TraesCS4A01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	69.58	70.74
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	57.01	70.18
HORVU4Hr1G076940.1	Barley	mitochondrion, peroxisome, plastid	53.55	67.12
CDY47458	Canola	cytosol	5.83	64.0
CDX89699	Canola	cytosol	36.79	62.15
CDY15199	Canola	cytosol	37.89	61.18
CDX94721	Canola	cytosol	42.81	59.34
CDY10355	Canola	cytosol	27.14	57.75
CDY21665	Canola	plasma membrane	53.01	57.06
CDX81929	Canola	plasma membrane	52.82	56.86
CDX70186	Canola	plastid	52.82	56.53
CDY29431	Canola	plasma membrane	49.73	56.41
CDY63070	Canola	cytosol	37.52	55.98
CDY46243	Canola	golgi	47.91	55.49
CDX76286	Canola	golgi	47.72	55.27
CDX98800	Canola	plastid	52.09	55.21
CDY26665	Canola	cytosol, peroxisome, plasma membrane	49.54	54.95
CDX71278	Canola	cytosol, peroxisome, plasma membrane	50.64	54.83
CDY07381	Canola	plasma membrane	49.36	54.53
CDY46211	Canola	cytosol, peroxisome, plasma membrane	50.27	54.44
CDY04232	Canola	plasma membrane	49.18	54.33
CDX89834	Canola	plasma membrane	50.46	53.17
CDY14892	Canola	endoplasmic reticulum, golgi, plastid	50.82	53.04
CDX96912	Canola	endoplasmic reticulum, golgi, plastid	50.64	52.75
CDY47457	Canola	cytosol, endoplasmic reticulum, plasma membrane	37.34	52.7
CDY18212	Canola	plasma membrane	50.46	52.36
CDY42109	Canola	plasma membrane	47.18	52.11
CDX89700	Canola	endoplasmic reticulum, golgi, plasma membrane	39.71	50.58
CDX90012	Canola	cytosol	47.91	49.72
CDY37475	Canola	plasma membrane	43.17	49.58
CDY32443	Canola	plasma membrane	42.99	49.37
CDY02266	Canola	endoplasmic reticulum, golgi, plasma membrane	39.89	49.21
CDY26762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	42.08	48.94
CDX69040	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	40.62	48.06
CDX75415	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	40.26	47.63
CDX71202	Canola	endoplasmic reticulum, golgi, plasma membrane	41.17	47.38
CDY17465	Canola	plasma membrane	40.44	46.74
CDX72475	Canola	endoplasmic reticulum, golgi	35.34	45.86
CDX76287	Canola	endoplasmic reticulum, golgi, plasma membrane	41.53	45.06
CDY49290	Canola	endoplasmic reticulum, golgi	34.43	44.68
CDY37951	Canola	endoplasmic reticulum, plasma membrane	35.34	43.21
CDY49219	Canola	endoplasmic reticulum, plasma membrane	35.15	42.6
CDY66107	Canola	endoplasmic reticulum, plasma membrane, plastid	34.79	42.54
CDX68323	Canola	endoplasmic reticulum, golgi	34.79	42.35
CDY33931	Canola	plastid	34.61	41.58
CDY05644	Canola	plasma membrane, plastid, vacuole	34.43	41.36
CDY41551	Canola	golgi	39.71	34.66
CDX80041	Canola	endoplasmic reticulum, golgi, plasma membrane	40.07	34.54
CDY49218	Canola	plasma membrane	0.36	0.7

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	KEGG:00650+2.3.1.19	InterPro:3-ktacl-CoA_syn	MapMan:5.1.6.1.1	GO:A0A078HCX3
UniProt:A0A078HCX3	InterPro:ACP_syn_III_C	EnsemblPlants:CDY35309	ProteinID:CDY35309	ProteinID:CDY35309.1	InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	EnsemblPlantsGene:GSBRNA2T00058275001	InterPro:IPR016039	PFAM:PF08392	PFAM:PF08541
PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF2	MetaCyc:PWY-4381	MetaCyc:PWY-5080	MetaCyc:PWY-5972
MetaCyc:PWY-6433	MetaCyc:PWY-6598	MetaCyc:PWY-7036	MetaCyc:PWY-7601	MetaCyc:PWY-7602	MetaCyc:PWY-7619
MetaCyc:PWY-7724	MetaCyc:PWY-7725	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniPathway:UPA00094
UniParc:UPI0004EF3D3A	SEG:seg	:	:	:	:

Description

BnaA04g15380D3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A078HCX3]

Coordinates

chrLK032350:+:9683..12291

Molecular Weight (calculated)

61824.6 Da

IEP (calculated)

9.353

GRAVY (calculated)

-0.160

Length

549 amino acids

Sequence
(BLAST)

001: MSRSTEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSREEIWKK LWDYDLATVI
101: GFFGVFVLTV CVYFMSRPRS VYLIDFACFK PSDELKVTRE EFIDLARKSG KFDEEILGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASMMIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGRDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALIRR
401: TFSPAAKTTT TTSSSATAKI NGAKSSSSSD LSKPYIPDYK LAFEHFCFHA ASKAVLEELQ KNLGLSDENM EASKMTLHRF GNTSSSGIWY ELAYMEAKES
501: VRRGDRVWQI AFGSGFKCNS VVWKAMRKVK KPARNNPWVD CIDRYPVAL

Best Arabidopsis Sequence Match ( AT2G26250.1 )
(BLAST)

001: MGRSNEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSREEIWKK LWDYDLATVI
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL

Arabidopsis Description

FDH3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VYA3]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.