CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26665	Canola	cytosol, peroxisome, plasma membrane	1.05	0.61
CDY42109	Canola	plasma membrane	1.05	0.6
CDY07381	Canola	plasma membrane	1.05	0.6
CDY04232	Canola	plasma membrane	1.05	0.6
CDX70186	Canola	plastid	1.05	0.58
CDX98800	Canola	plastid	1.05	0.58
CDX90012	Canola	cytosol	1.05	0.57
CDY26762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	0.7	0.42
CDY37475	Canola	plasma membrane	0.7	0.42
CDY32443	Canola	plasma membrane	0.7	0.42
CDY29431	Canola	plasma membrane	0.7	0.41
CDY21665	Canola	plasma membrane	0.7	0.39
CDX81929	Canola	plasma membrane	0.7	0.39
CDX89834	Canola	plasma membrane	0.7	0.38
CDY14892	Canola	endoplasmic reticulum, golgi, plastid	0.7	0.38
CDX96912	Canola	endoplasmic reticulum, golgi, plastid	0.7	0.38
CDY18212	Canola	plasma membrane	0.7	0.38
CDX77038	Canola	cytosol, endoplasmic reticulum, plasma membrane	0.7	0.38
CDX76724	Canola	cytosol, endoplasmic reticulum, plasma membrane	0.7	0.37
CDY11498	Canola	endoplasmic reticulum, peroxisome, plasma membrane	0.7	0.36
CDY35309	Canola	cytosol, endoplasmic reticulum, plasma membrane	0.7	0.36
CDY33931	Canola	plastid	0.35	0.22
CDY05644	Canola	plasma membrane, plastid, vacuole	0.35	0.22
CDX76286	Canola	golgi	0.35	0.21
CDY46243	Canola	golgi	0.35	0.21
CDX71278	Canola	cytosol, peroxisome, plasma membrane	0.35	0.2
CDY46211	Canola	cytosol, peroxisome, plasma membrane	0.35	0.2
CDY47457	Canola	cytosol, endoplasmic reticulum, plasma membrane	0.0	0.0
TraesCS1A01G413000.1	Wheat	golgi	0.0	0.0
CDY47458	Canola	cytosol	0.0	0.0
CDY15199	Canola	cytosol	0.0	0.0
TraesCS1B01G443100.1	Wheat	cytosol	0.0	0.0
CDY49219	Canola	endoplasmic reticulum, plasma membrane	0.0	0.0
CDY49290	Canola	endoplasmic reticulum, golgi	0.0	0.0
CDY63070	Canola	cytosol	0.0	0.0
CDY66107	Canola	endoplasmic reticulum, plasma membrane, plastid	0.0	0.0
EES19986	Sorghum	cytosol	0.0	0.0
Os05t0574500-01	Rice	nucleus	0.0	0.0
TraesCS1D01G420600.2	Wheat	cytosol	0.0	0.0
CDY41551	Canola	golgi	0.0	0.0
CDY37951	Canola	endoplasmic reticulum, plasma membrane	0.0	0.0
CDY17465	Canola	plasma membrane	0.0	0.0
CDX68323	Canola	endoplasmic reticulum, golgi	0.0	0.0
CDY10355	Canola	cytosol	0.0	0.0
CDY02266	Canola	endoplasmic reticulum, golgi, plasma membrane	0.0	0.0
CDX94721	Canola	cytosol	0.0	0.0
CDX89700	Canola	endoplasmic reticulum, golgi, plasma membrane	0.0	0.0
CDX89699	Canola	cytosol	0.0	0.0
CDX80041	Canola	endoplasmic reticulum, golgi, plasma membrane	0.0	0.0
CDX76287	Canola	endoplasmic reticulum, golgi, plasma membrane	0.0	0.0
CDX75415	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	0.0	0.0
CDX72475	Canola	endoplasmic reticulum, golgi	0.0	0.0
CDX71202	Canola	endoplasmic reticulum, golgi, plasma membrane	0.0	0.0
CDX69040	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY49218	EnsemblPlantsGene:GSBRNA2T00092590001	GO:A0A078IJG2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR34368	PANTHER:PTHR34368:SF1	ProteinID:CDY49218	ProteinID:CDY49218.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EEFFFA	UniProt:A0A078IJG2	MapMan:35.2	:	:	:

Description

BnaCnng17070DBnaCnng17070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJG2]

Coordinates

chrLK032818:+:68191..69612

Molecular Weight (calculated)

32773.3 Da

IEP (calculated)

8.127

GRAVY (calculated)

0.417

Length

287 amino acids

Sequence
(BLAST)

001: MKKRTIYSWG AAIVIFVVLM IVTPTIPQSQ AYHDFADQRT FFGIPNALNV ISNFPFLIIG LIGLVLCFYP DDYFRFSLRG EKLGWTCFFV GVAAVAFGSS
101: YYHLHPDDAR LVWDRLPMTI AFTSIMAIFV IERIDEHKGT YSIVPLLLVG LGVICRFFDD LRPYALVQFV PCIVIPLMAI LLPPMYTHST YWLWAAGFYL
201: LAKVEEAADK PIYSWTHHII SGHSIKHVCA AMVPVFLTLM LAKRSVQTER ISLYKTWKIS WTRSRGKGTE EESFECTYTN VAVEEAR

Best Arabidopsis Sequence Match ( AT1G71190.1 )
(BLAST)

001: MKKRTMSAWG SAILIFIILM IVTPTIPQSQ AYHNFADQRS FLGIPNFLNV ISNFPFLIIG LIGLILCFYP EDYFSFSLRG EKIGWTCFYI GVAAVAFGSS
101: YYHLHPNDAT LLWDRLPMTI AFTSIMAIFV IERIDEHKGT YSIAPLLLAG LVSILYWRFF DDLRPYALVQ FVPCIVIPLM AILLPPMYTH STYWLWAAGF
201: YLLAKVEEAA DKPIYSWTHH IISGHSLKHL CAAMVPVFLT LMLAKRTVQT ERISLYKTWK KGSEEERFEH SYSNVAVEET R

Arabidopsis Description

SAG18At1g71190 [Source:UniProtKB/TrEMBL;Acc:Q9C989]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.