CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

plastid 2
endoplasmic reticulum 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, endoplasmic reticulum, plastid
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	plastid
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35309	Canola	cytosol, endoplasmic reticulum, plasma membrane	98.68	95.63
Bra034298.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	94.36	95.62
CDY11498	Canola	endoplasmic reticulum, peroxisome, plasma membrane	95.86	93.07
AT2G26250.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	95.3	92.18
CDX76724	Canola	cytosol, endoplasmic reticulum, plasma membrane	94.55	91.96
KRH61616	Soybean	nucleus	78.76	78.17
KRH52284	Soybean	nucleus	78.57	78.13
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	76.88	77.17
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	70.11	76.59
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	62.78	74.89
Solyc08g067260.2.1	Tomato	cytosol, peroxisome, plasma membrane	69.55	73.12
PGSC0003DMT400019063	Potato	cytosol, peroxisome, plasma membrane	74.06	72.96
Os03t0181500-01	Rice	plasma membrane	71.43	70.11
Zm00001d027904_P001	Maize	plastid	71.05	69.61
EER95395	Sorghum	cytosol, peroxisome, plasma membrane	71.05	69.61
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	58.27	69.51
TraesCS4B01G297500.1	Wheat	golgi	70.49	69.44
TraesCS4D01G296400.1	Wheat	cytosol, peroxisome, plasma membrane	70.49	69.44
TraesCS4A01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	70.3	69.26
HORVU4Hr1G076940.1	Barley	mitochondrion, peroxisome, plastid	54.7	66.44
CDX89699	Canola	cytosol	37.97	62.15
CDY47458	Canola	cytosol	5.83	62.0
CDY15199	Canola	cytosol	38.53	60.29
CDX94721	Canola	cytosol	43.61	58.59
CDY10355	Canola	cytosol	27.63	56.98
CDY21665	Canola	plasma membrane	54.51	56.86
CDX81929	Canola	plasma membrane	54.32	56.67
CDY29431	Canola	plasma membrane	51.13	56.2
CDY63070	Canola	cytosol	38.53	55.71
CDY46243	Canola	golgi	49.62	55.7
CDX70186	Canola	plastid	53.57	55.56
CDX76286	Canola	golgi	49.44	55.49
CDY26665	Canola	cytosol, peroxisome, plasma membrane	50.94	54.75
CDY07381	Canola	plasma membrane	50.94	54.53
CDY04232	Canola	plasma membrane	50.75	54.33
CDX98800	Canola	plastid	52.82	54.25
CDX71278	Canola	cytosol, peroxisome, plasma membrane	51.69	54.24
CDY46211	Canola	cytosol, peroxisome, plasma membrane	51.32	53.85
CDY14892	Canola	endoplasmic reticulum, golgi, plastid	51.88	52.47
CDX89834	Canola	plasma membrane	51.32	52.4
CDY47457	Canola	cytosol, endoplasmic reticulum, plasma membrane	38.16	52.19
CDX96912	Canola	endoplasmic reticulum, golgi, plastid	51.69	52.18
CDY42109	Canola	plasma membrane	48.31	51.71
CDY18212	Canola	plasma membrane	51.32	51.61
CDX89700	Canola	endoplasmic reticulum, golgi, plasma membrane	40.6	50.12
CDX90012	Canola	cytosol	48.87	49.15
CDY37475	Canola	plasma membrane	43.98	48.95
CDY32443	Canola	plasma membrane	43.98	48.95
CDY02266	Canola	endoplasmic reticulum, golgi, plasma membrane	40.6	48.54
CDY26762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	42.86	48.31
CDX69040	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	41.35	47.41
CDX75415	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	40.98	46.98
CDX71202	Canola	endoplasmic reticulum, golgi, plasma membrane	41.92	46.75
CDY17465	Canola	plasma membrane	41.17	46.11
CDX72475	Canola	endoplasmic reticulum, golgi	36.28	45.63
CDY49290	Canola	endoplasmic reticulum, golgi	35.34	44.44
CDX76287	Canola	endoplasmic reticulum, golgi, plasma membrane	42.11	44.27
CDY37951	Canola	endoplasmic reticulum, plasma membrane	36.09	42.76
CDY66107	Canola	endoplasmic reticulum, plasma membrane, plastid	35.53	42.09
CDY33931	Canola	plastid	35.9	41.79
CDY49219	Canola	endoplasmic reticulum, plasma membrane	35.53	41.72
CDY05644	Canola	plasma membrane, plastid, vacuole	35.71	41.58
CDX68323	Canola	endoplasmic reticulum, golgi	35.15	41.46
CDY41551	Canola	golgi	41.35	34.98
CDX80041	Canola	endoplasmic reticulum, golgi, plasma membrane	41.73	34.85
CDY49218	Canola	plasma membrane	0.38	0.7

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	KEGG:00650+2.3.1.19	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1
GO:A0A078CPQ5	InterPro:ACP_syn_III_C	EnsemblPlants:CDX77038	ProteinID:CDX77038	ProteinID:CDX77038.1	InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0016747
EnsemblPlantsGene:GSBRNA2T00127608001	InterPro:IPR016039	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561
PANTHER:PTHR31561:SF2	MetaCyc:PWY-4381	MetaCyc:PWY-5080	MetaCyc:PWY-5972	MetaCyc:PWY-6433	MetaCyc:PWY-6598
MetaCyc:PWY-7036	MetaCyc:PWY-7601	MetaCyc:PWY-7602	MetaCyc:PWY-7619	MetaCyc:PWY-7724	MetaCyc:PWY-7725
SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniPathway:UPA00094	UniParc:UPI0004EF45F4	SEG:seg

Description

BnaC04g38330D

Coordinates

chrLK031809:-:612145..614812

Molecular Weight (calculated)

59928.4 Da

IEP (calculated)

9.053

GRAVY (calculated)

-0.144

Length

532 amino acids

Sequence
(BLAST)

001: MSRSSEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSGEEIWKK LWDYDIATVI
101: GFFGVFVLTV CVYFMSRPRS VYLIDFACFK PSDELKVTRE EFIDLARKSG KFDEEILGFK KRILQASGIG DETYVPRSIS SSENTTTMKE GREEASMMIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAVDLARDM LQSNPNSYAV VVSTEMVGYN WYVGRDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALIPT
401: AKINGAKSSS SSDLSKPYIP DYKLAFEHFC FHAASKAVLE ELQKNLGLSD ENMEASKMTL HRFGNTSSSG IWYELAYMEA KESVRRGDRV WQIAFGSGFK
501: CNSVVWKAMR KVKKPARNNP WVDCINRYPV AL

Best Arabidopsis Sequence Match ( AT2G26250.1 )
(BLAST)

001: MGRSNEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSREEIWKK LWDYDLATVI
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL

Arabidopsis Description

FDH3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VYA3]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.