Factsheet for PGSC0003DMT400019063

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g067260.2.1	Tomato	cytosol, peroxisome, plasma membrane	90.37	96.44
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	76.85	78.3
KRH61616	Soybean	nucleus	76.3	76.87
KRH52284	Soybean	nucleus	76.11	76.82
GSMUA_Achr6P11690_001	Banana	cytosol, peroxisome, plastid	68.52	75.98
GSMUA_Achr3P02010_001	Banana	golgi, peroxisome, plastid	61.85	74.89
CDX77038	Canola	cytosol, endoplasmic reticulum, plasma membrane	72.96	74.06
AT2G26250.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	74.81	73.45
Bra034298.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	70.93	72.95
Bra007766.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	73.89	72.94
CDY11498	Canola	endoplasmic reticulum, peroxisome, plasma membrane	73.89	72.81
CDY35309	Canola	cytosol, endoplasmic reticulum, plasma membrane	73.89	72.68
CDX76724	Canola	cytosol, endoplasmic reticulum, plasma membrane	73.52	72.58
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	59.07	71.52
EER95395	Sorghum	cytosol, peroxisome, plasma membrane	70.19	69.8
TraesCS4A01G007400.1	Wheat	cytosol, peroxisome, plasma membrane	69.63	69.63
TraesCS4D01G296400.1	Wheat	cytosol, peroxisome, plasma membrane	69.44	69.44
TraesCS4B01G297500.1	Wheat	golgi	69.44	69.44
Zm00001d027904_P001	Maize	plastid	69.63	69.24
Os03t0181500-01	Rice	plasma membrane	69.44	69.19
HORVU4Hr1G076940.1	Barley	mitochondrion, peroxisome, plastid	52.96	65.3
PGSC0003DMT400019029	Potato	plasma membrane	52.96	56.63
PGSC0003DMT400009451	Potato	cytosol, peroxisome, plasma membrane	54.26	56.45
PGSC0003DMT400042065	Potato	cytosol	38.15	55.38
PGSC0003DMT400067205	Potato	peroxisome	52.41	55.17
PGSC0003DMT400034973	Potato	plasma membrane	52.96	55.11
PGSC0003DMT400015633	Potato	plasma membrane	52.96	54.89
PGSC0003DMT400002734	Potato	cytosol, peroxisome, plasma membrane	50.93	53.82
PGSC0003DMT400014188	Potato	endoplasmic reticulum, golgi, plasma membrane	48.52	53.14
PGSC0003DMT400042071	Potato	plasma membrane	47.96	53.07
PGSC0003DMT400062136	Potato	cytosol, golgi, plasma membrane	48.7	53.02
PGSC0003DMT400032993	Potato	plasma membrane	48.52	52.82
PGSC0003DMT400037757	Potato	plastid	43.7	51.19
PGSC0003DMT400028047	Potato	plasma membrane	49.63	50.09
PGSC0003DMT400037714	Potato	plasma membrane	45.56	49.8
PGSC0003DMT400041959	Potato	endoplasmic reticulum, golgi, vacuole	39.81	48.97
PGSC0003DMT400041960	Potato	endoplasmic reticulum, golgi, vacuole	39.07	47.1
PGSC0003DMT400051894	Potato	endoplasmic reticulum, plasma membrane	36.48	43.58
PGSC0003DMT400049683	Potato	endoplasmic reticulum, golgi	32.59	39.55

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:102596949	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1
InterPro:ACP_syn_III_C	ncoils:Coil	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006629	GO:GO:0006633
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009409	GO:GO:0009416
GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016746
GO:GO:0016747	GO:GO:0080167	InterPro:IPR016039	UniProt:M1ABK5	PFAM:PF08392	PFAM:PF08541
EnsemblPlantsGene:PGSC0003DMG400007390	PGSC:PGSC0003DMG400007390	EnsemblPlants:PGSC0003DMT400019063	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF2
SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000295A2D5	RefSeq:XP_006361525.1	SEG:seg

Description

Beta-ketoacyl-CoA synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400007390]

Coordinates

chr8:+:40744583..40749316

Molecular Weight (calculated)

61495.9 Da

IEP (calculated)

9.230

GRAVY (calculated)

-0.268

Length

540 amino acids

Sequence
(BLAST)

001: MAREEHLLST DIVNRGISDE GSQTFSVRVQ RRLPDFLQSV NLKYVKLGYH YLIKHGIYLA ILPVLVLVFS AEVGSLSREE LWRKVWDSTT RYDLATVLSF
101: VALFVFTISL YIMSKPRPIY LLDFACYKPS DDLKVTKEQF IELARNSGKF NESSLEFQKR ILESSGIGDE TYVPKSIGSS ENTATMKEGR FEASTVMFGA
201: LDELFEKTKI RPKDVGVLVV NCSIFNPTPS LSAMIINHYK MRGNILSFNL GGMGCSAGII ALDLARDMLQ ANPNNYAIVI SGEMVGYNWY PGNERSMLIP
301: NCFFRMGCSA LLLSNRRRDY HRAKYSLEHI VRTHKASNDR AFRCIYQEED SQRYKGLKIS KDLVEVGGDA LKTNITTLGP LVLPLSEQLF FFGNLVWRHL
401: FGNKNAKTNN NNNNNSQQAN NIKPYIPDYK LAFEHFCVYA ASKTVLDELQ RNLELSEENM EASRATLHRF GNTSSSSIWY ELAYLEAKEK IRRGDRVWQI
501: AFGSGFKCNS AVWKAIRRVK KPSTNPWLGC VDRYPESLTQ

Best Arabidopsis Sequence Match ( AT2G26250.1 )
(BLAST)

001: MGRSNEQDLL STEIVNRGIE PSGPNAGSPT FSVRVRRRLP DFLQSVNLKY VKLGYHYLIN HAVYLATIPV LVLVFSAEVG SLSREEIWKK LWDYDLATVI
101: GFFGVFVLTA CVYFMSRPRS VYLIDFACYK PSDEHKVTKE EFIELARKSG KFDEETLGFK KRILQASGIG DETYVPRSIS SSENITTMKE GREEASTVIF
201: GALDELFEKT RVKPKDVGVL VVNCSIFNPT PSLSAMVINH YKMRGNILSY NLGGMGCSAG IIAIDLARDM LQSNPNSYAV VVSTEMVGYN WYVGSDKSMV
301: IPNCFFRMGC SAVMLSNRRR DFRHAKYRLE HIVRTHKAAD DRSFRSVYQE EDEQGFKGLK ISRDLMEVGG EALKTNITTL GPLVLPFSEQ LLFFAALLRR
401: TFSPAAKTST TTSFSTSATA KTNGIKSSSS DLSKPYIPDY KLAFEHFCFH AASKVVLEEL QKNLGLSEEN MEASRMTLHR FGNTSSSGIW YELAYMEAKE
501: SVRRGDRVWQ IAFGSGFKCN SVVWKAMRKV KKPTRNNPWV DCINRYPVPL

Arabidopsis Description

FDH3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VYA3]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.