Factsheet for PGSC0003DMT400009451

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g080450.1.1	Tomato	golgi, peroxisome, plasma membrane	98.07	98.45
AT1G19440.1	Thale cress	golgi, peroxisome, plasma membrane	83.24	83.72
CDY21665	Canola	plasma membrane	81.89	83.33
Bra031081.1-P	Field mustard	plasma membrane	81.7	82.97
CDX81929	Canola	plasma membrane	81.12	82.55
CDY29431	Canola	plasma membrane	76.49	82.02
Bra025738.1-P	Field mustard	plasma membrane	79.96	82.02
CDY26665	Canola	cytosol, peroxisome, plasma membrane	77.84	81.62
KRH15203	Soybean	plasma membrane	79.96	81.37
KRH05829	Soybean	cytosol, peroxisome, plasma membrane	79.77	80.7
Zm00001d009608_P001	Maize	plasma membrane	76.49	78.61
GSMUA_Achr2P08980_001	Banana	golgi, peroxisome, plasma membrane	69.94	78.57
GSMUA_Achr6P27270_001	Banana	cytosol, peroxisome, plasma membrane	63.78	78.44
Os05t0568000-02	Rice	plasma membrane	77.46	78.21
EES19964	Sorghum	endoplasmic reticulum, plasma membrane, plastid	78.23	78.08
Zm00001d039053_P001	Maize	plasma membrane	77.26	78.02
TraesCS1A01G406200.1	Wheat	plasma membrane	76.69	76.25
TraesCS1D01G414600.1	Wheat	peroxisome	76.69	75.81
TraesCS1B01G436300.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	76.69	75.81
GSMUA_Achr9P06980_001	Banana	cytosol, golgi, peroxisome	68.59	75.58
GSMUA_Achr5P09090_001	Banana	golgi, peroxisome, plasma membrane	58.19	72.08
HORVU1Hr1G089710.3	Barley	plastid	76.49	67.4
PGSC0003DMT400019029	Potato	plasma membrane	64.74	66.53
PGSC0003DMT400067205	Potato	peroxisome	64.93	65.69
PGSC0003DMT400002734	Potato	cytosol, peroxisome, plasma membrane	64.35	65.36
PGSC0003DMT400015633	Potato	plasma membrane	64.35	64.11
PGSC0003DMT400037757	Potato	plastid	56.84	63.99
PGSC0003DMT400032993	Potato	plasma membrane	59.92	62.7
PGSC0003DMT400034973	Potato	plasma membrane	62.43	62.43
PGSC0003DMT400042065	Potato	cytosol	44.7	62.37
PGSC0003DMT400062136	Potato	cytosol, golgi, plasma membrane	59.15	61.9
PGSC0003DMT400037714	Potato	plasma membrane	57.03	59.92
PGSC0003DMT400014188	Potato	endoplasmic reticulum, golgi, plasma membrane	55.3	58.22
PGSC0003DMT400042071	Potato	plasma membrane	53.95	57.38
PGSC0003DMT400028047	Potato	plasma membrane	56.45	54.77
PGSC0003DMT400041959	Potato	endoplasmic reticulum, golgi, vacuole	46.24	54.67
PGSC0003DMT400019063	Potato	cytosol, peroxisome, plasma membrane	56.45	54.26
PGSC0003DMT400041960	Potato	endoplasmic reticulum, golgi, vacuole	45.09	52.23
PGSC0003DMT400049683	Potato	endoplasmic reticulum, golgi	37.57	43.82
PGSC0003DMT400051894	Potato	endoplasmic reticulum, plasma membrane	37.76	43.36

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:102593540	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1
InterPro:ACP_syn_III_C	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:M0ZWA0
PFAM:PF08392	PFAM:PF08541	EnsemblPlantsGene:PGSC0003DMG400003683	PGSC:PGSC0003DMG400003683	EnsemblPlants:PGSC0003DMT400009451	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF65	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0002958AE4
RefSeq:XP_006341948.1	SEG:seg	:	:	:	:

Description

3-ketoacyl-CoA synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400003683]

Coordinates

chr4:+:69829283..69831330

Molecular Weight (calculated)

57814.4 Da

IEP (calculated)

9.544

GRAVY (calculated)

-0.086

Length

519 amino acids

Sequence
(BLAST)

001: MNGATGAQVN TADGGGGGGD PVGVQIQQSR RLPDFLQSVN LKYVKLGYHY LISHLLTLCL IPVMAVILVE VSQMNPDDIR QLWLHLQYNL VSVIICSAVL
101: VFGSTVYIMT RPRPVYLVDY SCYKAPEHLK APYERFMQHS RLTGDFDESS LEFQRKILER SGLGDETYVP EAMHQLPPQP SMQAAREEAE QVMFGALDKL
201: FANTSVKPKK IGVLVVNCSL FNPTPSLSAM IVNKYKLRGN IRSFNLGGMG CSAGVIAVDL AKDMLQVHRN TYAVVVSTEN ITQNWYFGNK KSMLIPNCLF
301: RVGGSAVLLS NKSMDRRRAK YKLVHAVRTH RGADDKAFRC VYQEQDDAGK TGVSLSKDLM AIAGGALKTN ITTLGPLVLP ISEQLLFFGS LIIKKIFNKH
401: IKPYIPDFKL AFDHFCIHAG GRAVIDELEK NLQLTQVHVE ASRMTLHRFG NTSSSSIWYE LAYIEAKGRM KKGNKVWQIA FGSGFKCNSA VWQALRNVKP
501: SPDGPWEDCI DRYPVKVVS

Best Arabidopsis Sequence Match ( AT1G19440.1 )
(BLAST)

001: MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY

Arabidopsis Description

KCS43-ketoacyl-CoA synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN49]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.