Factsheet for PGSC0003DMT400041960

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041959	Potato	endoplasmic reticulum, golgi, vacuole	91.52	93.39
Solyc06g053900.2.1	Tomato	cytosol, plasma membrane, plastid	87.28	78.99
PGSC0003DMT400042065	Potato	cytosol	56.92	68.55
CDX94721	Canola	cytosol	56.7	64.14
CDY63070	Canola	cytosol	49.78	60.6
PGSC0003DMT400042071	Potato	plasma membrane	62.95	57.79
PGSC0003DMT400014188	Potato	endoplasmic reticulum, golgi, plasma membrane	62.95	57.2
Os11t0591200-01	Rice	mitochondrion	54.46	56.48
PGSC0003DMT400034973	Potato	plasma membrane	61.61	53.18
PGSC0003DMT400019029	Potato	plasma membrane	58.71	52.08
CDX89834	Canola	plasma membrane	60.49	52.02
PGSC0003DMT400015633	Potato	plasma membrane	60.49	52.02
PGSC0003DMT400067205	Potato	peroxisome	58.93	51.46
Bra033694.1-P	Field mustard	golgi, peroxisome, plastid	60.04	51.14
AT1G04220.1	Thale cress	plasma membrane	60.27	51.14
CDY18212	Canola	plasma membrane	60.27	51.04
Bra015296.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	60.27	51.04
PGSC0003DMT400002734	Potato	cytosol, peroxisome, plasma membrane	58.04	50.88
PGSC0003DMT400037757	Potato	plastid	52.23	50.76
AT5G43760.1	Thale cress	endoplasmic reticulum, plasma membrane, plastid	59.82	50.66
CDY14892	Canola	endoplasmic reticulum, golgi, plastid	59.38	50.57
TraesCS6A01G073300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	57.14	50.39
Bra035992.1-P	Field mustard	plasma membrane	59.15	50.38
CDX96912	Canola	endoplasmic reticulum, golgi, plastid	59.15	50.28
KRH04744	Soybean	endoplasmic reticulum, plasma membrane, vacuole	52.01	49.89
TraesCS6B01G098300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	56.92	49.71
TraesCS4D01G148300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	56.7	49.61
TraesCS4A01G164400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	55.8	48.83
KRH57768	Soybean	plasma membrane	51.12	48.83
Zm00001d048953_P001	Maize	mitochondrion, plastid	55.8	48.73
KXG28804	Sorghum	plastid	55.8	47.89
PGSC0003DMT400032993	Potato	plasma membrane	52.46	47.38
TraesCS6D01G071600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	57.14	46.97
PGSC0003DMT400062136	Potato	cytosol, golgi, plasma membrane	51.79	46.77
PGSC0003DMT400037714	Potato	plasma membrane	50.89	46.15
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	49.78	45.7
PGSC0003DMT400028047	Potato	plasma membrane	54.24	45.42
PGSC0003DMT400009451	Potato	cytosol, peroxisome, plasma membrane	52.23	45.09
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	53.12	44.74
PGSC0003DMT400049683	Potato	endoplasmic reticulum, golgi	43.08	43.37
PGSC0003DMT400051894	Potato	endoplasmic reticulum, plasma membrane	39.73	39.38
PGSC0003DMT400019063	Potato	cytosol, peroxisome, plasma membrane	47.1	39.07

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:M1BC96	PFAM:PF08392	PFAM:PF08541
EnsemblPlantsGene:PGSC0003DMG400016276	PGSC:PGSC0003DMG400016276	EnsemblPlants:PGSC0003DMT400041960	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF25
SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0002967227	:	:

Description

Acyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400016276]

Coordinates

chr6:-:40069328..40075820

Molecular Weight (calculated)

50538.7 Da

IEP (calculated)

9.332

GRAVY (calculated)

-0.057

Length

448 amino acids

Sequence
(BLAST)

001: MLKSWPIILI VFLVAALYLI RGRPRNIYLV DFACYKPDEA DMMSKQQLLD IMSSTFVDEA VHLQKKVLER SGYSDKTYLP ESIRRLPEKI MTFEESRKGT
101: EKVIFGAIDD LLAKTKVKAR EIGIVIVNIG LYNPTIKTEY VLTPTPSLSS MIVNHYKLGV DVLTYNICGM GCSAGLISID LANRLLQTQV SAYAMVVSTE
201: STDSGYNLGK DKSKLVSNCL FRVGAAAILL SNCFSDSRRS KYKLMHVVRT HKGVDDRAFK SIYQEQDEDG NIGISLSKGP MVVAGETLKS NITTLGPLVL
301: PMSEQLLYFG YLIARKFFKL KNIKPYIPDF KLAFEHFFIH AGGRAVLDEM EKNLDLTEWH MEPSRMTLYR FGNTSSSSVW YELAYSEAKG RIKKGDRAWQ
401: IGFGSGFKCN SVVWHALKTI NPAMEKNPWT DEIRHFPVNV PLVMPLSV

Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)

001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ

Arabidopsis Description

KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.