Factsheet for Bra035992.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
endoplasmic reticulum 2
cytosol 1
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14892	Canola	endoplasmic reticulum, golgi, plastid	99.62	99.62
CDX96912	Canola	endoplasmic reticulum, golgi, plastid	99.43	99.24
Bra033694.1-P	Field mustard	golgi, peroxisome, plastid	97.91	97.91
AT5G43760.1	Thale cress	endoplasmic reticulum, plasma membrane, plastid	94.87	94.33
Bra015296.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	86.88	86.39
Os11t0591200-01	Rice	mitochondrion	59.51	72.45
Bra009413.1-P	Field mustard	cytosol, golgi, plasma membrane	69.58	70.79
PGSC0003DMT400042065	Potato	cytosol	49.05	69.35
TraesCS6A01G073300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	64.83	67.13
KXG28804	Sorghum	plastid	65.78	66.28
Zm00001d048953_P001	Maize	mitochondrion, plastid	64.64	66.28
TraesCS6B01G098300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	64.64	66.28
TraesCS4D01G148300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	64.45	66.21
TraesCS4A01G164400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	63.5	65.23
PGSC0003DMT400014188	Potato	endoplasmic reticulum, golgi, plasma membrane	60.65	64.71
Bra037304.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	55.7	64.25
Solyc05g013220.2.1	Tomato	endoplasmic reticulum, golgi, plastid	60.08	64.1
PGSC0003DMT400042071	Potato	plasma membrane	59.32	63.93
Bra025738.1-P	Field mustard	plasma membrane	61.03	63.44
Solyc06g053870.2.1	Tomato	mitochondrion	58.56	63.37
Bra034634.1-P	Field mustard	golgi	56.84	63.08
Bra031081.1-P	Field mustard	plasma membrane	61.22	63.01
TraesCS6D01G071600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	64.83	62.57
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	57.79	62.3
Bra001974.1-P	Field mustard	cytosol, peroxisome, plasma membrane	59.89	62.13
PGSC0003DMT400041959	Potato	endoplasmic reticulum, golgi, vacuole	51.71	61.96
Bra004034.1-P	Field mustard	plasma membrane	56.08	59.96
PGSC0003DMT400041960	Potato	endoplasmic reticulum, golgi, vacuole	50.38	59.15
KRH04744	Soybean	endoplasmic reticulum, plasma membrane, vacuole	52.47	59.1
Bra024749.1-P	Field mustard	plasma membrane	55.7	58.95
Solyc06g053900.2.1	Tomato	cytosol, plasma membrane, plastid	54.94	58.38
KRH57768	Soybean	plasma membrane	51.71	58.0
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	58.17	57.52
Bra036405.1-P	Field mustard	cytosol, plasma membrane, plastid	50.38	57.48
Bra017641.1-P	Field mustard	golgi	52.47	57.26
Bra032621.1-P	Field mustard	plasma membrane	52.66	56.42
Bra013081.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	50.95	55.03
Bra034635.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	50.38	52.37
Bra007766.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	54.18	52.1
Bra034298.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	50.76	50.86
Bra020664.1-P	Field mustard	plastid	39.54	46.95
Bra007966.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	39.92	46.77
Bra003934.1-P	Field mustard	plasma membrane	40.49	28.51

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
EnsemblPlantsGene:Bra035992	EnsemblPlants:Bra035992.1	EnsemblPlants:Bra035992.1-P	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
InterPro:IPR016039	UniProt:M4F4J2	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561
PANTHER:PTHR31561:SF25	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000253E661	SEG:seg

Description

AT5G43760 (E=4e-271) KCS20 | KCS20 (3-KETOACYL-COA SYNTHASE 20); fatty acid elongase

Coordinates

chrScaffold000111:+:352925..355502

Molecular Weight (calculated)

58835.2 Da

IEP (calculated)

9.322

GRAVY (calculated)

-0.092

Length

526 amino acids

Sequence
(BLAST)

001: MTQNQDQPHR PVPVHVTNSD QNPNNLPNFL LSVRLKYVKL GYHYLISNAL YILLLPLLAA TLANLSSFSL NDLTLLYNHL RFHFLSATIA TALLISLSTA
101: YFTTRPRRVF LLDFSCYKPD PSLICTRETF MDRSQRVGIF TEDNLAFQQK ILERSGLGQK TYFPEALLRV PPNPCMEEAR KEAETVMFGA IDAVLEKTGI
201: KPKDIGILVV NCSLFNPTPS LSAMIVNKYK LRGNILSYNL GGMGCSAGLI SIDLAKQLLQ VQPNSYALVV STENITQNWY LGNDRSMLLS NCIFRMGGAA
301: VLLSNRSSDR SRSKYQLIHT VRTHKGADDN AFGCVYQRED SNAEETGKVG VSLSKNLMAI AGEALKTNIT TLGPLVLPMS AQLLFFATLV ARKVFKVKKI
401: KPYIPDFKLA FEHFCIHAGG RAVLDEIEKN LDLSEWHMEP SRMTLNRFGN TSSSSLWYEL AYSEAKGRIK RGDRTWQIAF GSGFKCNSAV WKALRTVDPV
501: ENSNPWSDEI HEFPVAVPRI TPVTSS

Best Arabidopsis Sequence Match ( AT5G43760.1 )
(BLAST)

001: MSHNQNQPHR PVPVHVTNAE PNPNPNNLPN FLLSVRLKYV KLGYHYLISN ALYILLLPLL AATIANLSSF TINDLSLLYN TLRFHFLSAT LATALLISLS
101: TAYFTTRPRR VFLLDFSCYK PDPSLICTRE TFMDRSQRVG IFTEDNLAFQ QKILERSGLG QKTYFPEALL RVPPNPCMEE ARKEAETVMF GAIDAVLEKT
201: GVKPKDIGIL VVNCSLFNPT PSLSAMIVNK YKLRGNILSY NLGGMGCSAG LISIDLAKQM LQVQPNSYAL VVSTENITLN WYLGNDRSML LSNCIFRMGG
301: AAVLLSNRSS DRSRSKYQLI HTVRTHKGAD DNAFGCVYQR EDNNAEETGK IGVSLSKNLM AIAGEALKTN ITTLGPLVLP MSEQLLFFAT LVARKVFKVK
401: KIKPYIPDFK LAFEHFCIHA GGRAVLDEIE KNLDLSEWHM EPSRMTLNRF GNTSSSSLWY ELAYSEAKGR IKRGDRTWQI AFGSGFKCNS AVWKALRTID
501: PMDEKTNPWI DEIDDFPVQV PRITPITSS

Arabidopsis Description

KCS203-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178UE45]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.