Factsheet for Bra015296.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
plastid 1
endoplasmic reticulum 2
cytosol 1
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89834	Canola	plasma membrane	97.92	99.42
CDY18212	Canola	plasma membrane	98.87	98.87
AT1G04220.1	Thale cress	plasma membrane	92.63	92.8
Bra033694.1-P	Field mustard	golgi, peroxisome, plastid	86.77	87.26
Bra035992.1-P	Field mustard	plasma membrane	86.39	86.88
Os11t0591200-01	Rice	mitochondrion	59.55	72.92
Bra009413.1-P	Field mustard	cytosol, golgi, plasma membrane	68.43	70.02
PGSC0003DMT400042065	Potato	cytosol	48.96	69.62
TraesCS6A01G073300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	66.35	69.09
TraesCS6B01G098300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	66.16	68.23
TraesCS4D01G148300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	65.97	68.16
TraesCS4A01G164400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	64.84	66.99
Zm00001d048953_P001	Maize	mitochondrion, plastid	64.27	66.28
KXG28804	Sorghum	plastid	65.03	65.9
PGSC0003DMT400014188	Potato	endoplasmic reticulum, golgi, plasma membrane	60.87	65.31
Solyc05g013220.2.1	Tomato	endoplasmic reticulum, golgi, plastid	60.49	64.91
Bra037304.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	55.39	64.25
TraesCS6D01G071600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	66.16	64.22
PGSC0003DMT400042071	Potato	plasma membrane	58.98	63.93
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	58.79	63.73
Bra025738.1-P	Field mustard	plasma membrane	60.49	63.24
Bra031081.1-P	Field mustard	plasma membrane	61.06	63.21
PGSC0003DMT400041959	Potato	endoplasmic reticulum, golgi, vacuole	52.36	63.1
Solyc06g053870.2.1	Tomato	mitochondrion	57.66	62.76
Bra001974.1-P	Field mustard	cytosol, peroxisome, plasma membrane	59.74	62.33
Bra034634.1-P	Field mustard	golgi	55.58	62.03
PGSC0003DMT400041960	Potato	endoplasmic reticulum, golgi, vacuole	51.04	60.27
Bra004034.1-P	Field mustard	plasma membrane	55.2	59.35
Solyc06g053900.2.1	Tomato	cytosol, plasma membrane, plastid	55.39	59.19
KRH04744	Soybean	endoplasmic reticulum, plasma membrane, vacuole	51.8	58.67
Bra036405.1-P	Field mustard	cytosol, plasma membrane, plastid	50.47	57.92
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	58.22	57.89
KRH57768	Soybean	plasma membrane	51.23	57.78
Bra024749.1-P	Field mustard	plasma membrane	54.25	57.75
Bra032621.1-P	Field mustard	plasma membrane	51.98	56.01
Bra017641.1-P	Field mustard	golgi	50.47	55.39
Bra013081.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	50.66	55.03
Bra034635.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	50.09	52.37
Bra007766.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	53.69	51.92
Bra034298.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	50.47	50.86
Bra020664.1-P	Field mustard	plastid	39.32	46.95
Bra007966.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	39.13	46.1
Bra003934.1-P	Field mustard	plasma membrane	39.7	28.11

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
EnsemblPlantsGene:Bra015296	EnsemblPlants:Bra015296.1	EnsemblPlants:Bra015296.1-P	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0006950	GO:GO:0006970	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009628	GO:GO:0009922	GO:GO:0009987
GO:GO:0010345	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
GO:GO:0019748	InterPro:IPR016039	UniProt:M4DFM3	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF25	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000254409F
SEG:seg	:	:	:	:	:

Description

AT1G04220 (E=2e-251) KCS2 | KCS2 (3-KETOACYL-COA SYNTHASE 2); fatty acid elongase

Coordinates

chrA10:+:2625301..2628446

Molecular Weight (calculated)

59582.3 Da

IEP (calculated)

9.523

GRAVY (calculated)

-0.086

Length

529 amino acids

Sequence
(BLAST)

001: MNENHIQSAN NNNSPVTTVD VTNQKLPNFL LSVRLKYVKL GYHYLISNAV YIILLPVLFA ATSSSFKLSD LTLLCNHLLH FHLLPSTLFA TLLIFLTTLY
101: FTTRPRKVFL LDFACYKPDP SLICTRETFM DRSQRVGIFT EDNLAFQQKI LERSGLGQKT YFPEALLRVP PNPCMSEARK EAETVMFGAI DAVLEKTGVK
201: PKDIGILVVN CSLFNPTPSL SAMIVNKYKL RGNILSYNLG GMGCSAGLIS IDLAKQLLQV QANSYALVVS TENITLNWYL GNDRSMLLSN CIFRMGGAAV
301: LLSNRSSDRR RSKYQLIHTV RTHKGADDNA FNCVYQREDN NDNNKIGVSL SKNLMAIAGE ALKTNITTLG PLVLPMSEQL LFFMTLVARK VFKVKKIKPY
401: IPDFKLAFEH FCIHAGGRAV LDEIEKNLDL SEWHMEPSRM TLNRFGNTSS SSLWYELAYS EAKGRIKRGD RTWQIAFGSG FKCNSAVWRA LRSIDPSKEE
501: KTNPWIDEIH EFPVQVPRVS LVSSSSESR

Best Arabidopsis Sequence Match ( AT1G04220.1 )
(BLAST)

001: MNENHIQSDH MNNTIHVTNK KLPNFLLSVR LKYVKLGYHY LISNAVYILI LPVGLLAATS SSFSLTDLTL LYNHLLKFHF LSSTLFAALL IFLTTLYFTT
101: RPRRIFLLDF ACYKPDSSLI CTRETFMDRS QRVGIFTEDN LAFQQKILER SGLGQKTYFP EALLRVPPNP CMSEARKEAE TVMFGAIDAV LEKTGVNPKD
201: IGILVVNCSL FNPTPSLSAM IVNKYKLRGN VLSYNLGGMG CSAGLISIDL AKQLLQVQPN SYALVVSTEN ITLNWYLGND RSMLLSNCIF RMGGAAVLLS
301: NRSSDRCRSK YQLIHTVRTH KGSDDNAFNC VYQREDNDDN KQIGVSLSKN LMAIAGEALK TNITTLGPLV LPMSEQLLFF ATLVARKVFN VKKIKPYIPD
401: FKLAFEHFCI HAGGRAVLDE IEKNLDLSEW HMEPSRMTLN RFGNTSSSSL WYELAYSEAK GRIKRGDRTW QIAFGSGFKC NSAVWRALRT IDPSKEKKKK
501: TNPWIDEIHE FPVPVPRTSP VTSSSESR

Arabidopsis Description

KCS23-ketoacyl-CoA synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEP9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.