Factsheet for Bra032621.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
cytosol 1
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024839.1-P
Bra024840.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01120.1	Bra024839.1-P	AT2G01950.1	19000166
AT1G01120.1	Bra024840.1-P	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32443	Canola	plasma membrane	95.52	98.12
AT1G01120.1	Thale cress	plasma membrane	93.48	86.93
VIT_15s0048g02720.t01	Wine grape	cytosol, peroxisome, plasma membrane	73.52	68.11
Solyc10g009240.2.1	Tomato	peroxisome	72.1	66.92
PGSC0003DMT400028047	Potato	plasma membrane	72.91	66.92
KRH68953	Soybean	cytosol, golgi, nucleus	70.88	65.66
GSMUA_Achr1P02540_001	Banana	cytosol	54.38	62.97
Os03t0245700-02	Rice	cytosol, peroxisome, plastid	61.71	56.95
Zm00001d030343_P001	Maize	cytosol, peroxisome, plasma membrane	60.49	55.51
EER91722	Sorghum	peroxisome	60.29	55.33
Bra009413.1-P	Field mustard	cytosol, golgi, plasma membrane	57.84	54.93
TraesCS4D01G226100.1	Wheat	peroxisome	60.08	54.73
TraesCS4A01G068400.1	Wheat	peroxisome	60.29	54.71
HORVU4Hr1G063420.1	Barley	peroxisome	60.69	54.68
Zm00001d028406_P001	Maize	peroxisome	60.9	54.66
TraesCS4B01G225500.1	Wheat	peroxisome	60.08	54.03
KXG39781	Sorghum	peroxisome	60.29	53.92
Zm00001d047931_P001	Maize	peroxisome	59.88	53.85
Bra035992.1-P	Field mustard	plasma membrane	56.42	52.66
Bra033694.1-P	Field mustard	golgi, peroxisome, plastid	56.01	52.28
Bra015296.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	56.01	51.98
Bra025738.1-P	Field mustard	plasma membrane	53.56	51.98
Bra037304.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	48.07	51.75
Bra031081.1-P	Field mustard	plasma membrane	53.77	51.66
Bra004034.1-P	Field mustard	plasma membrane	50.92	50.81
Bra001974.1-P	Field mustard	cytosol, peroxisome, plasma membrane	52.34	50.69
Bra034634.1-P	Field mustard	golgi	48.27	50.0
Bra036405.1-P	Field mustard	cytosol, plasma membrane, plastid	46.23	49.24
Bra024749.1-P	Field mustard	plasma membrane	49.49	48.89
Bra017641.1-P	Field mustard	golgi	46.03	46.89
Bra034298.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	50.1	46.86
Bra007766.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	51.73	46.44
Bra013081.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	46.03	46.41
Bra034635.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	46.64	45.26
Bra007966.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	39.1	42.76
Bra020664.1-P	Field mustard	plastid	37.47	41.53
Bra003934.1-P	Field mustard	plasma membrane	39.92	26.24

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
EnsemblPlantsGene:Bra032621	EnsemblPlants:Bra032621.1	EnsemblPlants:Bra032621.1-P	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005829
GO:GO:0005840	GO:GO:0006629	GO:GO:0006633	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009409	GO:GO:0009416	GO:GO:0009628	GO:GO:0009922	GO:GO:0009987
GO:GO:0010025	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
GO:GO:0022626	InterPro:IPR016039	UniProt:M4EUY8	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF65	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI00025430F9
SEG:seg	:	:	:	:	:

Description

AT1G01120 (E=1e-193) KCS1 | KCS1 (3-KETOACYL-COA SYNTHASE 1); acyltransferase/ fatty acid elongase

Coordinates

chrA09:-:36876819..36878381

Molecular Weight (calculated)

55117.9 Da

IEP (calculated)

9.099

GRAVY (calculated)

-0.073

Length

491 amino acids

Sequence
(BLAST)

001: MDQERLTAEM AFKDSSSAVI RIRRRLPDFL TSVKLKYVKL GLHNSFNFTT FLFLLIILPL TGTVLVQLTG LTFETFSELW YNHAVQLDGV TRLACLVSLC
101: FVLIIYVTNR SKPVYLVDFS CYKPEDERKM SVDSFLKMTE QNGAFTDDTV QFQQRISNRA GLGDETYLPR GITSTPPKLN MSEARAEAEA VMFGALDSLF
201: EKTGIKPAEV GILIVNCSLF NPTPSLSAMI VNHYKMREDI KSYNLGGMGC SAGLISIDLA NNLLKANPNS YAVVVSTENI TLNWYFGNDR SMLLCNCIFR
301: MGGAAILLSN RRQDRSKSKY ELVNVVRTHK GSDDKNYNCV YQKEDERGTI GVSLARELMS VAGDALKTNI TTLGPMVLPL SEQLMFLVSL VKRKLLKLKK
401: NLDLKDWHME PSRMTLHRFG NTSSSSLWYE MAYTEAKGRV KAGDRLWQIA FGSGFKCNSA VWKALRVVST EELTGNAWAG SIENYPVKIV Q

Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)

001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ

Arabidopsis Description

KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.