Factsheet for VIT_15s0048g02720.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g009240.2.1	Tomato	peroxisome	78.68	78.83
PGSC0003DMT400028047	Potato	plasma membrane	79.25	78.5
KRH68953	Soybean	cytosol, golgi, nucleus	74.15	74.15
Bra032621.1-P	Field mustard	plasma membrane	68.11	73.52
GSMUA_Achr1P02540_001	Banana	cytosol	53.21	66.51
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	62.26	64.58
VIT_05s0020g04540.t01	Wine grape	plasma membrane	62.64	63.72
Os03t0245700-02	Rice	cytosol, peroxisome, plastid	62.83	62.59
Zm00001d030343_P001	Maize	cytosol, peroxisome, plasma membrane	62.26	61.68
EER91722	Sorghum	peroxisome	62.26	61.68
VIT_18s0001g12550.t01	Wine grape	cytosol, peroxisome, plasma membrane	59.06	61.49
TraesCS4D01G226100.1	Wheat	peroxisome	62.26	61.22
VIT_03s0063g02640.t01	Wine grape	plasma membrane	58.11	61.11
HORVU4Hr1G063420.1	Barley	peroxisome	62.64	60.92
TraesCS4A01G068400.1	Wheat	peroxisome	61.89	60.63
Zm00001d028406_P001	Maize	peroxisome	62.45	60.51
KXG39781	Sorghum	peroxisome	62.64	60.47
Zm00001d047931_P001	Maize	peroxisome	61.89	60.07
TraesCS4B01G225500.1	Wheat	peroxisome	61.89	60.07
AT3G10280.1	Thale cress	endoplasmic reticulum, plasma membrane	51.13	59.04
AT2G46720.1	Thale cress	endoplasmic reticulum, plasma membrane	51.89	59.01
VIT_14s0006g02990.t01	Wine grape	plasma membrane	52.83	56.91
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	52.64	56.25
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	51.51	55.49
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	53.58	53.58
VIT_11s0016g04700.t01	Wine grape	plastid	62.26	53.48
VIT_07s0141g00090.t01	Wine grape	cytosol	42.45	52.45
VIT_09s0070g00300.t01	Wine grape	cytosol, peroxisome, plasma membrane	47.92	50.2
VIT_07s0141g00030.t01	Wine grape	endoplasmic reticulum, extracellular	40.57	48.53
VIT_07s0141g00070.t01	Wine grape	cytosol	36.6	48.5
VIT_12s0034g01840.t01	Wine grape	endoplasmic reticulum, golgi	40.19	46.41
VIT_07s0141g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	40.19	45.71
VIT_10s0042g01230.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	38.11	45.09
CDY41551	Canola	golgi	52.83	44.52
CDX80041	Canola	endoplasmic reticulum, golgi, plasma membrane	53.02	44.11

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:100247295	wikigene:100247295	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10
MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C	ProteinID:CCB61290	ProteinID:CCB61290.1	UniProt:F6I2X3	InterPro:FAE1_typ3_polyketide_synth
EMBL:FN596739	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	EntrezGene:LOC100247295	wikigene:LOC100247295
PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF65	SUPFAM:SSF53901
TIGR:TC54275	TIGR:TC65751	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0001984DCF	ArrayExpress:VIT_15s0048g02720
EnsemblPlantsGene:VIT_15s0048g02720	EnsemblPlants:VIT_15s0048g02720.t01	unigene:Vvi.14075	RefSeq:XP_002264721	RefSeq:XP_002264721.1	:

Description

3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:F6I2X3]

Coordinates

chr15:-:16838283..16840163

Molecular Weight (calculated)

58944.2 Da

IEP (calculated)

8.867

GRAVY (calculated)

-0.103

Length

530 amino acids

Sequence
(BLAST)

001: MGSIEMDKER LTAEMAFKDS SSVVIKIRQK LPDFLQSVKL KYVKLGYGYS CNAATVLKFG VVLPLLVATV VQITGLRFDD VSDLWTSRAL LVDTATAVTG
101: SAVLLFLLGV YWAKRPSPVY LVDFACYKPE DGRKMSVESF LEMTEENGKF EEETVQFQRR ISTRSGLGDE TYLPSGITSR PPNLCMKEAR AEAEAVMFGA
201: LDSLFSKTGV KPSDIGILIV NCSLFNPTPS LSAMIVNHYK LRTDISSYNL GGMGCSAGLI SIDLAKHLLK AKPNTYAVVV STENITLNWY FGNDRSMLLC
301: NCIFRMGGAA VLLSNKSRDR SRSKYELVHT VRTHKGADDN SYNCVYQRED DKGTIGVSLA RELMAVAGDA LKTNITTLGP LVLPFSEQFM FFVTLVRRKL
401: MKARVKPYIP DFKKAFEHFC IHAGGRAVLD ELQKNLQLSE WHMEPSRMTL HRFGNTSSSS LWYELAYTEA KGRVSGGDRV WQIAFGSGFK CNSAVWRSLR
501: EIPVGESGDN PWADSVDRYP VKVPVDATKP

Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)

001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ

Arabidopsis Description

KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.