Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 5
- vacuole 4
- plasma membrane 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G10280.1 | Thale cress | endoplasmic reticulum, plasma membrane | 97.64 | 99.13 |
| CDY41551 | Canola | golgi | 87.77 | 65.02 |
| CDX80041 | Canola | endoplasmic reticulum, golgi, plasma membrane | 88.2 | 64.52 |
| AT1G01120.1 | Thale cress | plasma membrane | 59.87 | 52.84 |
| VIT_15s0048g02720.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 59.01 | 51.89 |
| AT2G26640.1 | Thale cress | plasma membrane | 56.65 | 51.87 |
| Solyc10g009240.2.1 | Tomato | peroxisome | 58.58 | 51.61 |
| PGSC0003DMT400028047 | Potato | plasma membrane | 58.8 | 51.22 |
| AT2G15090.1 | Thale cress | golgi | 51.93 | 50.31 |
| AT5G43760.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 56.22 | 49.53 |
| AT1G04220.1 | Thale cress | plasma membrane | 56.01 | 49.43 |
| AT1G19440.1 | Thale cress | golgi, peroxisome, plasma membrane | 54.72 | 49.42 |
| KRH68953 | Soybean | cytosol, golgi, nucleus | 55.36 | 48.68 |
| AT4G34250.1 | Thale cress | endoplasmic reticulum, golgi | 51.07 | 48.28 |
| AT4G34510.1 | Thale cress | plasma membrane | 50.43 | 48.25 |
| GSMUA_Achr1P02540_001 | Banana | cytosol | 43.78 | 48.11 |
| Os03t0245700-02 | Rice | cytosol, peroxisome, plastid | 54.51 | 47.74 |
| Zm00001d030343_P001 | Maize | cytosol, peroxisome, plasma membrane | 54.72 | 47.66 |
| EER91722 | Sorghum | peroxisome | 54.72 | 47.66 |
| AT2G16280.1 | Thale cress | golgi, peroxisome, plasma membrane | 52.36 | 47.66 |
| AT1G25450.1 | Thale cress | plasma membrane | 50.0 | 47.36 |
| TraesCS4D01G226100.1 | Wheat | peroxisome | 54.29 | 46.94 |
| AT1G68530.1 | Thale cress | plasma membrane | 50.0 | 46.88 |
| TraesCS4A01G068400.1 | Wheat | peroxisome | 54.29 | 46.77 |
| TraesCS4B01G225500.1 | Wheat | peroxisome | 54.72 | 46.7 |
| HORVU4Hr1G063420.1 | Barley | peroxisome | 54.51 | 46.61 |
| AT4G34520.1 | Thale cress | golgi | 49.57 | 45.65 |
| Zm00001d028406_P001 | Maize | peroxisome | 53.0 | 45.16 |
| KXG39781 | Sorghum | peroxisome | 52.79 | 44.81 |
| Zm00001d047931_P001 | Maize | peroxisome | 52.15 | 44.51 |
| AT5G49070.1 | Thale cress | plasma membrane, vacuole | 41.63 | 41.81 |
| AT1G71160.1 | Thale cress | endoplasmic reticulum, plasma membrane | 41.2 | 41.74 |
| AT2G26250.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 47.64 | 40.36 |
Protein Annotations
| KEGG:00061+2.3.1.180 | KEGG:00062+2.3.1.199 | InterPro:3-ktacl-CoA_syn | Gene3D:3.40.47.10 | MapMan:5.1.6.1.1 | EntrezGene:819284 |
| EntrezGene:820190 | ProteinID:AAC69929.1 | ProteinID:AAF02814.1 | ProteinID:AAG24645.1 | InterPro:ACP_syn_III_C | ProteinID:AEC10745.1 |
| ProteinID:AEE74883.1 | EMBL:AF188484 | ArrayExpress:AT2G46720 | EnsemblPlantsGene:AT2G46720 | RefSeq:AT2G46720 | TAIR:AT2G46720 |
| RefSeq:AT2G46720-TAIR-G | EnsemblPlants:AT2G46720.1 | TAIR:AT2G46720.1 | Unigene:At.36468 | InterPro:FAE1_typ3_polyketide_synth | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006629 | GO:GO:0006633 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016746 |
| GO:GO:0016747 | GO:GO:0102336 | GO:GO:0102337 | GO:GO:0102338 | GO:GO:0102756 | Symbol:HIC |
| InterPro:IPR016039 | RefSeq:NP_182195.1 | RefSeq:NP_187639.1 | PFAM:PF08392 | PFAM:PF08541 | PIRSF:PIRSF036417 |
| PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000293 | PO:PO:0009001 | PO:PO:0009046 | PO:PO:0020003 |
| PANTHER:PTHR31561 | PANTHER:PTHR31561:SF65 | UniProt:Q9ZUZ0 | SUPFAM:SSF53901 | TMHMM:TMhelix | InterPro:Thiolase-like |
| UniParc:UPI000004866F | SEG:seg | : | : | : | : |
Description
HIC3-ketoacyl-CoA synthase 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUZ0]
Coordinates
chr2:+:19197330..19200442
Molecular Weight (calculated)
52178.6 Da
IEP (calculated)
9.258
GRAVY (calculated)
0.047
Length
466 amino acids
Sequence
(BLAST)
(BLAST)
001: MFIAMADFKI LLLILILISL FELDLLHFHH DFFSPFPVKI GLLLISIFFY AYSTTRSKPV YLVDFSCHQP TDSCKISSET FFNMAKGAQL YTDETIQFMT
101: RILNRSGLGD DTYSPRCMLT SPPTPSMYEA RHESELVIFG ALNSLFKKTG IEPREVGIFI VNCSLFNPNP SLSSMIVNRY KLKTDVKTYN LSGMGCSAGA
201: ISVDLATNLL KANPNTYAVI VSTENMTLSM YRGNDRSMLV PNCLFRVGGA AVMLSNRSQD RVRSKYELTH IVRTHKGSSD KHYTCAEQKE DSKGIVGVAL
301: SKELTVVAGD SLKTNLTALG PLVLPLSEKL RFILFLVKSK LFRLKVSPYV PDFKLCFKHF CIHAGGRALL DAVEKGLGLS EFDLEPSRMT LHRFGNTSSS
401: SLWYELAYVE AKCRVKRGDR VWQLAFGSGF KCNSIVWRAL RTIPANESLV GNPWGDSVHK YPVHVT
101: RILNRSGLGD DTYSPRCMLT SPPTPSMYEA RHESELVIFG ALNSLFKKTG IEPREVGIFI VNCSLFNPNP SLSSMIVNRY KLKTDVKTYN LSGMGCSAGA
201: ISVDLATNLL KANPNTYAVI VSTENMTLSM YRGNDRSMLV PNCLFRVGGA AVMLSNRSQD RVRSKYELTH IVRTHKGSSD KHYTCAEQKE DSKGIVGVAL
301: SKELTVVAGD SLKTNLTALG PLVLPLSEKL RFILFLVKSK LFRLKVSPYV PDFKLCFKHF CIHAGGRALL DAVEKGLGLS EFDLEPSRMT LHRFGNTSSS
401: SLWYELAYVE AKCRVKRGDR VWQLAFGSGF KCNSIVWRAL RTIPANESLV GNPWGDSVHK YPVHVT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.