Factsheet for Zm00001d028406_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	peroxisome, secretory
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01120.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39781	Sorghum	peroxisome	96.34	95.99
Zm00001d047931_P001	Maize	peroxisome	94.88	95.05
Os03t0245700-02	Rice	cytosol, peroxisome, plastid	88.3	90.79
TraesCS4D01G226100.1	Wheat	peroxisome	86.11	87.38
HORVU4Hr1G063420.1	Barley	peroxisome	87.02	87.34
TraesCS4A01G068400.1	Wheat	peroxisome	86.29	87.25
TraesCS4B01G225500.1	Wheat	peroxisome	86.47	86.63
Zm00001d030343_P001	Maize	cytosol, peroxisome, plasma membrane	77.15	78.88
GSMUA_Achr1P02540_001	Banana	cytosol	60.15	77.59
CDY15199	Canola	cytosol	43.88	70.59
AT1G01120.1	Thale cress	plasma membrane	60.33	62.5
VIT_15s0048g02720.t01	Wine grape	cytosol, peroxisome, plasma membrane	60.51	62.45
Solyc10g009240.2.1	Tomato	peroxisome	59.78	61.81
KRH68953	Soybean	cytosol, golgi, nucleus	59.78	61.7
Bra032621.1-P	Field mustard	plasma membrane	54.66	60.9
PGSC0003DMT400028047	Potato	plasma membrane	59.41	60.75
Zm00001d045660_P001	Maize	mitochondrion	31.63	59.45
CDY37475	Canola	plasma membrane	51.92	59.41
CDY32443	Canola	plasma membrane	51.92	59.41
Zm00001d016438_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	55.94	59.19
CDX90012	Canola	cytosol	57.04	58.98
Zm00001d046444_P001	Maize	plasma membrane	55.03	58.45
Zm00001d039094_P001	Maize	cytosol	54.11	58.15
Zm00001d009608_P001	Maize	plasma membrane	52.47	56.83
Zm00001d037328_P001	Maize	cytosol	38.03	56.68
Zm00001d039053_P001	Maize	plasma membrane	52.65	56.03
Zm00001d048953_P001	Maize	mitochondrion, plastid	51.19	54.58
Zm00001d048061_P001	Maize	golgi	48.99	54.25
Zm00001d028241_P003	Maize	endoplasmic reticulum, golgi, plasma membrane	48.81	54.05
AT2G46720.1	Thale cress	endoplasmic reticulum, plasma membrane	45.16	53.0
AT3G10280.1	Thale cress	endoplasmic reticulum, plasma membrane	44.42	52.94
Zm00001d027904_P001	Maize	plastid	49.54	49.91
Zm00001d032948_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	44.79	49.49
Zm00001d051787_P001	Maize	mitochondrion	43.14	48.66
Zm00001d014168_P001	Maize	peroxisome, plasma membrane, plastid	44.61	48.32
Zm00001d017941_P001	Maize	plasma membrane	43.14	47.87
Zm00001d027766_P001	Maize	mitochondrion	45.7	47.26
Zm00001d009354_P001	Maize	endoplasmic reticulum	36.56	41.15
Zm00001d044580_P001	Maize	mitochondrion	36.56	41.07
Zm00001d044579_P001	Maize	golgi	36.38	40.28
CDY41551	Canola	golgi	45.52	39.59
CDX80041	Canola	endoplasmic reticulum, golgi, plasma membrane	45.52	39.09

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:103633519	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1
UniProt:A0A1D6JVU0	InterPro:ACP_syn_III_C	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039
ProteinID:ONL95912.1	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF67
SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000221BBC8	EnsemblPlantsGene:Zm00001d028406	EnsemblPlants:Zm00001d028406_P001
EnsemblPlants:Zm00001d028406_T001	SEG:seg	:	:	:	:

Description

3-ketoacyl-CoA synthase 1

Coordinates

chr1:-:33752854..33754497

Molecular Weight (calculated)

60649.5 Da

IEP (calculated)

9.281

GRAVY (calculated)

-0.104

Length

547 amino acids

Sequence
(BLAST)

001: MESAPAAVME RERLTAEMAF RGADEARRDG GEPAPSIVIK IRRRLPDFAR SIKLKYVRLG IRHGGSPTSV LPMLCVPAVA AAAYSFVRLD VIYYSIDLLT
101: CVAWLGTALL LLTVYYFKRP RPVYLVDFAC YKPEEQLKIS KSAFLEMTES TGSFNEAALD FQTKITNRSA LGDETYLPPG VQARPPRLNM AEARMEAEAV
201: MFGCLDALFE STGIDPRRDV RILIVNCSLF NPTPSLASMI INHYRMREDV KSFNLGGMGC SAGLIAIDLA KDMLQANPGS YAVVLSTENI TLNWYFGNDR
301: SMLLSNCIFR MGGAAALLSN RRADAGRAKY RLLHTVRTHK GATDECFNCV YQREDEVGKV GVSLARELMA VAGDALKTNI TTLGPLVLPL SEQLKFLKSL
401: MMRRVFRVKG VRPYIPDFRR AFEHFCVHAG GRAVLEEVQR SLSLQDTDME PSKCSLHRFG NTSSSSLWYE LAYAEAKGRV RRGHRVWQIG FGSGFKCNSA
501: VWRALRDVPP LSSSTGAAAG PPGRKGAQSC CNPWVDDVDR YPPKAYV

Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)

001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ

Arabidopsis Description

KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.