Factsheet for Zm00001d032948_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014168_P001	Maize	peroxisome, plasma membrane, plastid	90.1	88.32
EER91618	Sorghum	plastid	93.33	88.17
Os10t0416200-01	Rice	cytosol, mitochondrion	79.6	75.33
TraesCS6A01G415500.2	Wheat	mitochondrion	75.15	73.66
TraesCS6B01G473900.1	Wheat	mitochondrion	74.95	73.61
Zm00001d027766_P001	Maize	mitochondrion	66.46	62.19
Zm00001d045660_P001	Maize	mitochondrion	34.14	58.08
GSMUA_Achr6P23320_001	Banana	endoplasmic reticulum, golgi, vacuole	45.25	56.14
Zm00001d037328_P001	Maize	cytosol	40.0	53.95
Zm00001d039094_P001	Maize	cytosol	55.35	53.83
Zm00001d048953_P001	Maize	mitochondrion, plastid	55.15	53.22
Zm00001d046444_P001	Maize	plasma membrane	54.55	52.43
Zm00001d016438_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	54.55	52.22
Zm00001d048061_P001	Maize	golgi	50.1	50.2
Zm00001d009608_P001	Maize	plasma membrane	50.91	49.9
Zm00001d028241_P003	Maize	endoplasmic reticulum, golgi, plasma membrane	49.09	49.19
Zm00001d039053_P001	Maize	plasma membrane	50.1	48.25
Zm00001d030343_P001	Maize	cytosol, peroxisome, plasma membrane	50.71	46.92
Zm00001d051787_P001	Maize	mitochondrion	44.24	45.15
Zm00001d028406_P001	Maize	peroxisome	49.49	44.79
Zm00001d017941_P001	Maize	plasma membrane	44.24	44.42
Zm00001d047931_P001	Maize	peroxisome	48.89	44.32
Zm00001d044580_P001	Maize	mitochondrion	41.41	42.09
Zm00001d009354_P001	Maize	endoplasmic reticulum	40.61	41.36
Zm00001d044579_P001	Maize	golgi	40.0	40.08
Zm00001d027904_P001	Maize	plastid	43.84	39.96

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:100282655	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1
InterPro:ACP_syn_III_C	UniProt:B6T9X3	EMBL:EU961788	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
InterPro:IPR016039	ProteinID:ONM06390.1	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561
PANTHER:PTHR31561:SF16	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000182C9E5	EnsemblPlantsGene:Zm00001d032948
EnsemblPlants:Zm00001d032948_P001	EnsemblPlants:Zm00001d032948_T001	SEG:seg	:	:	:

Description

3-ketoacyl-CoA synthase

Coordinates

chr1:-:244409830..244413837

Molecular Weight (calculated)

54252.8 Da

IEP (calculated)

9.608

GRAVY (calculated)

0.070

Length

495 amino acids

Sequence
(BLAST)

001: MAVMSRRRVI QLVLVGVVVF LVAPRLSWNL PGGLEKLGLQ QSPAAVAVAC WAAAVAAWAY AVSRPRPVYL VDLSGYVAGA SHEASRAKTI AHFGRCGRFS
101: DESMAFQKRM LERSGLGEQT HFPASLISVP VDMCLRTARE ESHAVIFGVV DDLLRRARVA GGDVGVLIFN SSLLSPTPSF TSLIANRYGM RRDVVSHNLS
201: GMGCSAGIIA IDLAKRLLQV HSDTYALVVS TENITLNAYM GNNRPMLVTN TLFRVGGAAI LLSNRRADRR RAKYQLIHTV RTHRGAHDQS FGCVTQEEDD
301: AGCVGVSLAK ELMVVAGEAL RTNITTLGPL VLPMSEQLRF LATVVLNRVF RARVRAYLPD FKLAFDHFCI HAGGRGVLDE LERSLNLSAW HMEPSRMTLC
401: RFGNTSSSSL WYELAYCEAK GRIRKGDRVW QIAFGSGFKC NSAVWKALRT VDGGEEGNPW TPEIDVLPIH VPKVSPIDET TYKFADGATY KISLG

Best Arabidopsis Sequence Match ( AT1G04220.1 )
(BLAST)

001: MNENHIQSDH MNNTIHVTNK KLPNFLLSVR LKYVKLGYHY LISNAVYILI LPVGLLAATS SSFSLTDLTL LYNHLLKFHF LSSTLFAALL IFLTTLYFTT
101: RPRRIFLLDF ACYKPDSSLI CTRETFMDRS QRVGIFTEDN LAFQQKILER SGLGQKTYFP EALLRVPPNP CMSEARKEAE TVMFGAIDAV LEKTGVNPKD
201: IGILVVNCSL FNPTPSLSAM IVNKYKLRGN VLSYNLGGMG CSAGLISIDL AKQLLQVQPN SYALVVSTEN ITLNWYLGND RSMLLSNCIF RMGGAAVLLS
301: NRSSDRCRSK YQLIHTVRTH KGSDDNAFNC VYQREDNDDN KQIGVSLSKN LMAIAGEALK TNITTLGPLV LPMSEQLLFF ATLVARKVFN VKKIKPYIPD
401: FKLAFEHFCI HAGGRAVLDE IEKNLDLSEW HMEPSRMTLN RFGNTSSSSL WYELAYSEAK GRIKRGDRTW QIAFGSGFKC NSAVWRALRT IDPSKEKKKK
501: TNPWIDEIHE FPVPVPRTSP VTSSSESR

Arabidopsis Description

KCS23-ketoacyl-CoA synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEP9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.