Factsheet for Zm00001d017941_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 3
golgi 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30818	Sorghum	golgi, mitochondrion	93.31	94.46
Zm00001d051787_P001	Maize	mitochondrion	92.9	94.43
Os02t0731900-01	Rice	plasma membrane	88.44	87.03
TraesCS6D01G274600.1	Wheat	golgi, plasma membrane	84.79	86.36
TraesCS6A01G293700.1	Wheat	golgi, plasma membrane	84.58	86.16
TraesCS6B01G324200.1	Wheat	plasma membrane	84.38	85.95
HORVU6Hr1G073300.1	Barley	golgi, plasma membrane	84.18	85.74
Zm00001d045660_P001	Maize	mitochondrion	49.49	83.85
Zm00001d037328_P001	Maize	cytosol	62.27	83.65
TraesCS1B01G421100.1	Wheat	golgi	76.27	81.03
TraesCS1D01G401000.1	Wheat	plasma membrane	76.06	80.82
TraesCS1A01G392800.1	Wheat	plasma membrane	75.86	80.43
HORVU1Hr1G086760.1	Barley	cytosol	76.47	74.65
Zm00001d028241_P003	Maize	endoplasmic reticulum, golgi, plasma membrane	61.26	61.13
Zm00001d009354_P001	Maize	endoplasmic reticulum	60.24	61.11
Zm00001d048061_P001	Maize	golgi	60.65	60.53
KRG90814	Soybean	cytosol, golgi, plasma membrane	60.65	60.28
KRH35956	Soybean	plasma membrane	60.45	60.08
VIT_14s0006g02990.t01	Wine grape	plasma membrane	59.43	59.55
Solyc02g085870.2.1	Tomato	plasma membrane	59.84	59.48
Zm00001d044580_P001	Maize	mitochondrion	58.62	59.34
PGSC0003DMT400032993	Potato	plasma membrane	59.43	59.07
Zm00001d044579_P001	Maize	golgi	58.82	58.7
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	59.03	58.67
KRH45255	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	59.03	58.67
PGSC0003DMT400037757	Potato	plastid	54.77	58.57
Bra004034.1-P	Field mustard	plasma membrane	58.22	58.33
CDY04232	Canola	plasma membrane	58.62	58.15
CDY42109	Canola	plasma membrane	58.42	57.95
CDY07381	Canola	plasma membrane	58.42	57.95
Bra024749.1-P	Field mustard	plasma membrane	58.42	57.95
PGSC0003DMT400062136	Potato	cytosol, golgi, plasma membrane	58.22	57.86
GSMUA_Achr3P07400_001	Banana	plasma membrane	45.64	57.84
AT1G68530.1	Thale cress	plasma membrane	58.01	57.55
AT1G25450.1	Thale cress	plasma membrane	57.4	57.52
Solyc02g063140.2.1	Tomato	golgi	57.61	57.26
PGSC0003DMT400037714	Potato	plasma membrane	56.8	56.68
Solyc05g009270.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	56.19	56.07
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	54.16	54.27
GSMUA_Achr5P05870_001	Banana	plasma membrane	46.04	54.05
Solyc05g009280.2.1	Tomato	golgi, plasma membrane, plastid	56.19	53.37
Zm00001d009608_P001	Maize	plasma membrane	52.74	51.49
Zm00001d039053_P001	Maize	plasma membrane	51.93	49.81
Zm00001d016438_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	51.93	49.52
Zm00001d039094_P001	Maize	cytosol	50.51	48.92
Zm00001d048953_P001	Maize	mitochondrion, plastid	50.71	48.73
Zm00001d046444_P001	Maize	plasma membrane	49.9	47.77
Zm00001d030343_P001	Maize	cytosol, peroxisome, plasma membrane	49.29	45.42
Zm00001d027766_P001	Maize	mitochondrion	48.48	45.18
Zm00001d032948_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	44.42	44.24
Zm00001d014168_P001	Maize	peroxisome, plasma membrane, plastid	45.03	43.96
Zm00001d047931_P001	Maize	peroxisome	47.87	43.22
Zm00001d028406_P001	Maize	peroxisome	47.87	43.14
Zm00001d027904_P001	Maize	plastid	44.62	40.52

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:100279934	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1
InterPro:ACP_syn_III_C	ProteinID:AQK74569.1	UniProt:B8A0R6	EMBL:BT055158	EMBL:BT063439	InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF12	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000191738C
EnsemblPlantsGene:Zm00001d017941	EnsemblPlants:Zm00001d017941_P001	EnsemblPlants:Zm00001d017941_T001	SEG:seg	:	:

Description

3-ketoacyl-CoA synthase 5

Coordinates

chr5:+:210498173..210500108

Molecular Weight (calculated)

54464.3 Da

IEP (calculated)

9.090

GRAVY (calculated)

0.057

Length

493 amino acids

Sequence
(BLAST)

001: MRPPPQGPRT TMSMGSPVQL RRLKPLYQLV VNNILAIVAV PLAAAVLLKA SSLGPEEILA LRPAHMFLAA FLPAAATVLY LMLRPRAVYL VDYACFRTSP
101: NCRVPFATFL EHSRVWPGFD ERSVRFMTRL LERSGLGEET CLPYAQHYIP PSRDLESSRA EAELVIFSAI DDLLAKTGVS PRDIDILVVN CSLFAPTPSF
201: ADMVAHRYRL RGDVRNVHLA GMGCSAGLVS VELARNLLQV APRGARALVV STETITPNYY MGEERAMLLP NCLFRMGGAA ALLSTDGAGA RFRLARVVRT
301: LRGASDGAYR CVYQEEDERG NVGINLSKDL MSIAGDALKA NITAMGPLVL PASEQLLFAL SFIARKVLNN RIRPYIPDFR TAFEHFCIHA GGRAVIDELQ
401: RSLTLSDEQV EASRMTLHRF GNTSSSSLWY ELAYVEAKGR MRRGDRVWMI GFGSGFKCNS AAWECIRPAA NADGPWANCI HRYPVHIPDV LKH

Best Arabidopsis Sequence Match ( AT1G19440.1 )
(BLAST)

001: MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY

Arabidopsis Description

KCS43-ketoacyl-CoA synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN49]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.