Factsheet for Zm00001d046444_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
endoplasmic reticulum 2
extracellular 1
golgi 1
plasma membrane 2
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plastid

plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26640.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT2G26640.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT2G26640.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88601	Sorghum	endoplasmic reticulum, plasma membrane, plastid	98.64	98.45
Os06t0598800-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	94.37	93.64
Zm00001d016438_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	84.08	83.75
GSMUA_AchrUn_...	Banana	peroxisome	62.72	81.36
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	79.81	80.43
KRH56654	Soybean	endoplasmic reticulum	79.42	80.2
GSMUA_Achr10P...	Banana	plasma membrane	67.18	80.09
KRH03757	Soybean	cytosol, peroxisome, plasma membrane	79.03	79.8
PGSC0003DMT400067205	Potato	peroxisome	79.42	79.73
Solyc06g065560.1.1	Tomato	nucleus	79.42	79.73
Solyc08g067410.1.1	Tomato	plasma membrane	77.86	79.41
PGSC0003DMT400019029	Potato	plasma membrane	77.67	79.21
GSMUA_Achr7P08410_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	59.81	78.77
AT2G26640.1	Thale cress	plasma membrane	77.67	78.59
CDX70186	Canola	plastid	78.06	78.36
CDX98800	Canola	plastid	78.25	77.8
Bra009413.1-P	Field mustard	cytosol, golgi, plasma membrane	78.06	77.76
KRH63016	Soybean	cytosol, peroxisome, plasma membrane	76.89	77.65
KRH54862	Soybean	cytosol, peroxisome, plasma membrane	75.92	76.67
Zm00001d039094_P001	Maize	cytosol	73.01	73.87
Solyc12g006820.1.1	Tomato	plasma membrane	71.46	73.6
PGSC0003DMT400002734	Potato	cytosol, peroxisome, plasma membrane	71.46	72.02
Zm00001d048953_P001	Maize	mitochondrion, plastid	67.57	67.84
VIT_11s0016g04700.t01	Wine grape	plastid	80.39	67.1
Zm00001d009608_P001	Maize	plasma membrane	65.63	66.93
Zm00001d039053_P001	Maize	plasma membrane	66.41	66.54
Zm00001d048061_P001	Maize	golgi	60.0	62.55
Zm00001d028241_P003	Maize	endoplasmic reticulum, golgi, plasma membrane	59.81	62.35
Zm00001d045660_P001	Maize	mitochondrion	33.4	59.11
Zm00001d037328_P001	Maize	cytosol	40.78	57.22
Zm00001d030343_P001	Maize	cytosol, peroxisome, plasma membrane	57.86	55.7
Zm00001d028406_P001	Maize	peroxisome	58.45	55.03
Zm00001d047931_P001	Maize	peroxisome	58.25	54.95
Zm00001d032948_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	52.43	54.55
Zm00001d014168_P001	Maize	peroxisome, plasma membrane, plastid	52.43	53.47
Zm00001d027904_P001	Maize	plastid	54.76	51.93
Zm00001d027766_P001	Maize	mitochondrion	52.62	51.23
Zm00001d051787_P001	Maize	mitochondrion	47.77	50.72
Zm00001d017941_P001	Maize	plasma membrane	47.77	49.9
Zm00001d009354_P001	Maize	endoplasmic reticulum	40.97	43.42
Zm00001d044580_P001	Maize	mitochondrion	40.39	42.71
Zm00001d044579_P001	Maize	golgi	38.84	40.49

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	EntrezGene:542018
InterPro:ACP_syn_III_C	ProteinID:AQL04282.1	ProteinID:AQL04283.1	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
InterPro:IPR016039	UniProt:K7VAF4	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561
PANTHER:PTHR31561:SF8	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000189D59C	EnsemblPlantsGene:Zm00001d046444
EnsemblPlants:Zm00001d046444_P001	EnsemblPlants:Zm00001d046444_T001	SEG:seg	:	:	:

Description

fatty acid elongase2 fatty acid elongase2

Coordinates

chr9:+:90216733..90219166

Molecular Weight (calculated)

57852.6 Da

IEP (calculated)

9.252

GRAVY (calculated)

-0.105

Length

515 amino acids

Sequence
(BLAST)

001: METSAPPNAP APPAQPRRRL PDFQQSVRLK YVKLGYHYLI SHGMYLLLSP LMALVAVQLS TVSPHDLADL WEQLRFNLLS VVACSTLLVF LSTVYFLTRP
101: RPVYLLDFAC YKPESERKCT RETFMHCSKL TGSFTDENLE FQRKILERSG LGEDTYLPPA VLRVPPNPCM DEARKEARAV MFGAIDQLLE KTGVRPKDIG
201: VLVVNCSLFN PTPSLSAMVV NHYKLRGNIV SYNLGGMGCS AGLLSIDLAK DLLQVHPNSY ALVISMENIT LNWYFGNNRS MLVSNCLFRM GGAAILLSNR
301: RSDRRRSKYE LVHTVRTHKG ANDKCFGCVT QEEDEIGKIG VSLSKDLMAV AGDALKTNIT TLGPLVLPLS EQLLFMGTLI AKKVLKMKIK PYIPDFKLAF
401: EHFCIHAGGR AVLDELEKNL ELTDWHMEPS RMTLYRFGNT SSSSLWYELA YTEAKGRIRK RDRIWQIAFG SGFKCNSAVW KALRTVNPAK EKSPWMDEID
501: NFPVDVPKIS KVGGA

Best Arabidopsis Sequence Match ( AT2G26640.1 )
(BLAST)

001: MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI

Arabidopsis Description

KCS113-ketoacyl-CoA synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48780]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.