CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:

plastid 4
endoplasmic reticulum 2
cytosol 1
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, plastid
PProwler:	secretory
PTS1:	peroxisome
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EES09373
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26640.1	EES09373	AT4G09570.1	19130088
AT2G26640.1	EES16732	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046444_P001	Maize	plasma membrane	98.45	98.64
Os06t0598800-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	93.99	93.45
EES06493	Sorghum	endoplasmic reticulum, peroxisome, plasma membrane, plastid	84.88	83.59
GSMUA_AchrUn_...	Banana	peroxisome	62.98	81.86
GSMUA_Achr10P...	Banana	plasma membrane	67.44	80.56
KRH56654	Soybean	endoplasmic reticulum	79.46	80.39
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	79.46	80.23
KRH03757	Soybean	cytosol, peroxisome, plasma membrane	79.26	80.2
Solyc06g065560.1.1	Tomato	nucleus	79.07	79.53
PGSC0003DMT400067205	Potato	peroxisome	79.07	79.53
Solyc08g067410.1.1	Tomato	plasma membrane	77.71	79.41
GSMUA_Achr7P08410_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	60.08	79.28
PGSC0003DMT400019029	Potato	plasma membrane	77.52	79.21
AT2G26640.1	Thale cress	plasma membrane	77.33	78.39
CDX70186	Canola	plastid	77.71	78.17
CDX98800	Canola	plastid	77.91	77.61
Bra009413.1-P	Field mustard	cytosol, golgi, plasma membrane	77.71	77.56
KRH63016	Soybean	cytosol, peroxisome, plasma membrane	76.55	77.45
KRH54862	Soybean	cytosol, peroxisome, plasma membrane	75.58	76.47
EES19987	Sorghum	cytosol, endoplasmic reticulum, plastid	75.78	76.22
Solyc12g006820.1.1	Tomato	plasma membrane	71.32	73.6
PGSC0003DMT400002734	Potato	cytosol, peroxisome, plasma membrane	71.32	72.02
VIT_11s0016g04700.t01	Wine grape	plastid	80.43	67.26
EES19964	Sorghum	endoplasmic reticulum, plasma membrane, plastid	66.09	65.58
KXG28804	Sorghum	plastid	66.09	65.33
EER92628	Sorghum	plasma membrane	60.27	62.96
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	59.11	57.33
EER91722	Sorghum	peroxisome	58.14	56.07
KXG39781	Sorghum	peroxisome	57.95	54.46
EER95458	Sorghum	mitochondrion	55.81	54.44
EER95395	Sorghum	cytosol, peroxisome, plasma membrane	54.65	51.93
EER91618	Sorghum	plastid	52.71	51.91
KXG30818	Sorghum	golgi, mitochondrion	47.29	50.1
KXG19727	Sorghum	mitochondrion, plastid	46.71	48.88
EER89559	Sorghum	mitochondrion, plasma membrane	45.16	47.55
OQU76197	Sorghum	golgi	42.83	46.14
EER89567	Sorghum	endoplasmic reticulum, golgi, plastid	40.7	46.05
KXG19733	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	42.25	45.32
EER88189	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	40.7	43.57
EES03073	Sorghum	endoplasmic reticulum, golgi, plasma membrane	41.09	43.27
EES00849	Sorghum	endoplasmic reticulum, golgi	40.89	42.71
EES19986	Sorghum	cytosol	7.56	17.65

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	EntrezGene:8082244
InterPro:ACP_syn_III_C	UniProt:C5Z5K2	EnsemblPlants:EER88601	ProteinID:EER88601	ProteinID:EER88601.1	InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF8	MetaCyc:PWY-4381	MetaCyc:PWY-5080	MetaCyc:PWY-5972	MetaCyc:PWY-6433
MetaCyc:PWY-6598	MetaCyc:PWY-7036	MetaCyc:PWY-7601	MetaCyc:PWY-7602	MetaCyc:PWY-7619	MetaCyc:PWY-7724
MetaCyc:PWY-7725	EnsemblPlantsGene:SORBI_3010G181500	SUPFAM:SSF53901	unigene:Sbi.8298	TMHMM:TMhelix	InterPro:Thiolase-like
UniParc:UPI0001A8938F	RefSeq:XP_002437234.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:52071725..52075228

Molecular Weight (calculated)

57955.7 Da

IEP (calculated)

9.254

GRAVY (calculated)

-0.108

Length

516 amino acids

Sequence
(BLAST)

001: METSAPPNAA APPAQQPRRR LPDFQQSVRL KYVKLGYHYL ISHGMYLLLS PLMALVAVQL STVSPRDLAD LWEQLRFNLL SVVACSTLLV FLSTVYFLTR
101: PRPVYLLDFA CYKPEPERKC TRQTFMHCSN LTGSFTDDNL EFQRKILERS GLGEDTYLPP AVLRVPPNPC MDEARKEARA VMFGAIDQLL EKTGVRPKDI
201: GVLVVNCSLF NPTPSLSAMV VNHYKLRGNI VSYNLGGMGC SAGLLSIDLA KDLLQVHPNS YALVISMENI TLNWYFGNNR SMLVSNCLFR MGGAAILLSN
301: RRSDRRRSKY ELVHTVRTHK GADDKCFGCV TQEEDEIGKI GVSLSKDLMA VAGDALKTNI TTLGPLVLPL SEQLLFMGTL IAKKVLKMKI KPYIPDFKLA
401: FEHFCIHAGG RAVLDELEKN LELTDWHMEP SRMTLYRFGN TSSSSLWYEL AYTEAKGRIR KRDRIWQIAF GSGFKCNSAV WKALRTVNPA KEKSPWMDEI
501: DNFPVDVPKI SKVGGA

Best Arabidopsis Sequence Match ( AT2G26640.1 )
(BLAST)

001: MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI

Arabidopsis Description

KCS113-ketoacyl-CoA synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48780]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.