CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

nucleus 1
mitochondrion 2
endoplasmic reticulum 3
cytosol 1
extracellular 2
vacuole 2
plasma membrane 2
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044580_P001	Maize	mitochondrion	79.35	80.49
EES03073	Sorghum	endoplasmic reticulum, golgi, plasma membrane	73.68	74.29
KXG30818	Sorghum	golgi, mitochondrion	58.1	58.93
EER89559	Sorghum	mitochondrion, plasma membrane	58.1	58.57
KXG19727	Sorghum	mitochondrion, plastid	57.49	57.61
KXG19733	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	51.82	53.22
PGSC0003DMT400037757	Potato	plastid	49.6	53.15
EER88189	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	50.81	52.07
EER92628	Sorghum	plasma membrane	51.42	51.42
EER89567	Sorghum	endoplasmic reticulum, golgi, plastid	47.37	51.32
KRH35956	Soybean	plasma membrane	51.21	51.01
OQU76197	Sorghum	golgi	49.39	50.94
KRG90814	Soybean	cytosol, golgi, plasma membrane	50.81	50.6
PGSC0003DMT400032993	Potato	plasma membrane	50.81	50.6
Solyc02g085870.2.1	Tomato	plasma membrane	50.61	50.4
PGSC0003DMT400062136	Potato	cytosol, golgi, plasma membrane	50.0	49.8
Bra004034.1-P	Field mustard	plasma membrane	49.6	49.8
VIT_14s0006g02990.t01	Wine grape	plasma membrane	49.6	49.8
KRH45255	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	49.8	49.6
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	49.8	49.6
PGSC0003DMT400037714	Potato	plasma membrane	49.6	49.6
Solyc05g009270.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	49.6	49.6
CDY07381	Canola	plasma membrane	49.6	49.3
Bra024749.1-P	Field mustard	plasma membrane	49.6	49.3
CDY42109	Canola	plasma membrane	49.6	49.3
Solyc02g063140.2.1	Tomato	golgi	49.39	49.19
GSMUA_Achr3P07400_001	Banana	plasma membrane	38.66	49.1
CDY04232	Canola	plasma membrane	49.39	49.09
AT1G25450.1	Thale cress	plasma membrane	48.79	48.98
AT1G68530.1	Thale cress	plasma membrane	48.99	48.69
GSMUA_Achr5P05870_001	Banana	plasma membrane	40.49	47.62
Solyc05g009280.2.1	Tomato	golgi, plasma membrane, plastid	50.0	47.59
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	47.37	47.56
EES19987	Sorghum	cytosol, endoplasmic reticulum, plastid	44.74	43.08
EER95458	Sorghum	mitochondrion	45.75	42.72
EES06493	Sorghum	endoplasmic reticulum, peroxisome, plasma membrane, plastid	44.74	42.18
EES19964	Sorghum	endoplasmic reticulum, plasma membrane, plastid	44.33	42.12
EER88601	Sorghum	endoplasmic reticulum, plasma membrane, plastid	42.71	40.89
KXG28804	Sorghum	plastid	42.71	40.42
EER91722	Sorghum	peroxisome	43.52	40.19
EER91618	Sorghum	plastid	41.9	39.5
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	41.7	38.72
KXG39781	Sorghum	peroxisome	41.3	37.16
EER95395	Sorghum	cytosol, peroxisome, plasma membrane	38.26	34.81
EES19986	Sorghum	cytosol	6.88	15.38

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	EntrezGene:8074958
InterPro:ACP_syn_III_C	UniProt:C5XM80	EnsemblPlants:EES00849	ProteinID:EES00849	ProteinID:EES00849.1	InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF9	MetaCyc:PWY-4381	MetaCyc:PWY-5080	MetaCyc:PWY-5972	MetaCyc:PWY-6433
MetaCyc:PWY-6598	MetaCyc:PWY-7036	MetaCyc:PWY-7601	MetaCyc:PWY-7602	MetaCyc:PWY-7619	MetaCyc:PWY-7724
MetaCyc:PWY-7725	EnsemblPlantsGene:SORBI_3003G178500	SUPFAM:SSF53901	unigene:Sbi.5282	TMHMM:TMhelix	InterPro:Thiolase-like
UniParc:UPI0001A84729	RefSeq:XP_002455729.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:45640683..45642479

Molecular Weight (calculated)

54901.7 Da

IEP (calculated)

8.240

GRAVY (calculated)

0.085

Length

494 amino acids

Sequence
(BLAST)

001: MHTRKTMAKL LSLKTWYQLF VDNFLAIVAV AFVAAALRRA WPVSVDDLAG SLRAVPPVRI LTAVILTAGV AQLRRLRRPR DVYLVEYGCF RPKPCFRAPF
101: ATCLEHAFYL PYQVDPESVT FSIRLLERSG LGEETSLPIS YHYIPPDRSL EAAREETEDV IFSAVDEVFA RSSVRPEEID VLIVNCSIFT PTPVFVDMVV
201: NRYKLRPDVK SLNLSGMGCG AGLVNIGLAR HLLQVAPPGT HVLTVSTEIL SSQYYIGSDR SMLLPNCLFR MGAAATILSN SPERARFRLG RIVRRKTAAR
301: DADYNCIFQE EDDNGILGVR LSKDLTTTAG QALKRNIMAF GPLVLPVSEQ LLVALSLLKR KLLSCWGVKV RLYRPDFRTA FEHFCIHAGG RGVIDEVQRG
401: LGLSEEDVEA SRMTLHRFGN TSSSSVLYEL AYIEAKGCMS KGDRVWMISF GSGFNCSSVA WECLKPAIDS DGPWADCIHR YPVQLPDVLD GSIA

Best Arabidopsis Sequence Match ( AT1G19440.1 )
(BLAST)

001: MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY

Arabidopsis Description

KCS43-ketoacyl-CoA synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN49]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.