CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037328_P001	Maize	cytosol	71.6	96.19
TraesCS7B01G113000.1	Wheat	golgi	86.0	86.35
TraesCS7A01G205700.1	Wheat	golgi	85.6	85.95
TraesCS7D01G208500.1	Wheat	golgi	85.8	85.63
KXG30818	Sorghum	golgi, mitochondrion	77.89	78.85
EER89559	Sorghum	mitochondrion, plasma membrane	76.06	76.53
Os06t0260500-00	Rice	mitochondrion	78.3	73.24
KXG19733	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	61.26	62.79
EES03073	Sorghum	endoplasmic reticulum, golgi, plasma membrane	61.05	61.43
EER92628	Sorghum	plasma membrane	60.65	60.53
VIT_14s0006g02990.t01	Wine grape	plasma membrane	59.63	59.76
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	59.84	59.48
KRG90814	Soybean	cytosol, golgi, plasma membrane	59.84	59.48
KRH35956	Soybean	plasma membrane	59.63	59.27
EER88189	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	57.81	59.13
OQU76197	Sorghum	golgi	57.2	58.87
GSMUA_Achr3P07400_001	Banana	plasma membrane	46.45	58.87
KRH45255	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	58.42	58.06
CDY42109	Canola	plasma membrane	58.42	57.95
Bra024749.1-P	Field mustard	plasma membrane	58.42	57.95
Solyc02g085870.2.1	Tomato	plasma membrane	58.22	57.86
Bra004034.1-P	Field mustard	plasma membrane	57.61	57.72
PGSC0003DMT400037757	Potato	plastid	53.96	57.7
PGSC0003DMT400032993	Potato	plasma membrane	58.01	57.66
EES00849	Sorghum	endoplasmic reticulum, golgi	57.61	57.49
AT1G68530.1	Thale cress	plasma membrane	57.81	57.34
CDY04232	Canola	plasma membrane	57.81	57.34
CDY07381	Canola	plasma membrane	57.61	57.14
PGSC0003DMT400062136	Potato	cytosol, golgi, plasma membrane	57.4	57.06
AT1G25450.1	Thale cress	plasma membrane	56.8	56.91
Solyc02g063140.2.1	Tomato	golgi	57.2	56.85
EER89567	Sorghum	endoplasmic reticulum, golgi, plastid	52.33	56.58
PGSC0003DMT400037714	Potato	plasma membrane	56.39	56.28
Solyc05g009270.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	55.58	55.47
GSMUA_Achr5P05870_001	Banana	plasma membrane	46.65	54.76
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	53.75	53.86
Solyc05g009280.2.1	Tomato	golgi, plasma membrane, plastid	54.16	51.45
EES19964	Sorghum	endoplasmic reticulum, plasma membrane, plastid	51.32	48.65
EES06493	Sorghum	endoplasmic reticulum, peroxisome, plasma membrane, plastid	50.91	47.9
EER88601	Sorghum	endoplasmic reticulum, plasma membrane, plastid	48.88	46.71
EES19987	Sorghum	cytosol, endoplasmic reticulum, plastid	48.48	46.59
EER91722	Sorghum	peroxisome	49.7	45.79
KXG28804	Sorghum	plastid	48.28	45.59
EER95458	Sorghum	mitochondrion	48.48	45.18
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	47.26	43.8
KXG39781	Sorghum	peroxisome	47.87	42.99
EER91618	Sorghum	plastid	45.44	42.75
EER95395	Sorghum	cytosol, peroxisome, plasma membrane	44.22	40.15
EES19986	Sorghum	cytosol	6.29	14.03

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	UniProt:A0A194YID3
InterPro:ACP_syn_III_C	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	EnsemblPlants:KXG19727
ProteinID:KXG19727	ProteinID:KXG19727.1	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561
PANTHER:PTHR31561:SF64	MetaCyc:PWY-4381	MetaCyc:PWY-5080	MetaCyc:PWY-5972	MetaCyc:PWY-6433	MetaCyc:PWY-6598
MetaCyc:PWY-7036	MetaCyc:PWY-7601	MetaCyc:PWY-7602	MetaCyc:PWY-7619	MetaCyc:PWY-7724	MetaCyc:PWY-7725
EnsemblPlantsGene:SORBI_3010G107200	SUPFAM:SSF53901	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0003C71A83	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:10540398..10542392

Molecular Weight (calculated)

54047.8 Da

IEP (calculated)

9.328

GRAVY (calculated)

0.155

Length

493 amino acids

Sequence
(BLAST)

001: MAGSSAAHPQ LKQLKPLYQH VVNNFVAVLA APLAVAAVVN AARVGPDELL ARVQAVRAVH AFLAVFVAAA AATLYVMLRP RSVYLVDYAC FRTRPNCRVP
101: FATFLEHAKL VTFVEGASID ERSVRFMTRL LERSGLGEET CLPPAHHYIP PYRNMEASRA EVELVIFSAI DDLLAKTGIS PAAIDILVVN CSLFAPIPSF
201: TDMIIHRYGM RPDIRNVHLS GMGCSAGLVS VGLAKNFLQV APKGAHALVV STETITPNYY VGKERAMLLP NCLFRMGGAA VLLSTSRGRA RFRLARVVRT
301: LTGAQDSAYR CVFQEEDGEG HRGINLSKDL MTIAGDALKA NITAIGPLVL PASEQLLFAL SFIARRVLNR RVKPYLPDFR TAFEHFCIHA GGRAVIDELQ
401: RSLGLSDEDV EASRMALHRF GNTSSSSVWY ELAYIEAKGR MRRGDRVWMI GFGSGFKCNS AAWECIAPAR TAEGPWAESI SRYPVHIPEV LKH

Best Arabidopsis Sequence Match ( AT1G19440.1 )
(BLAST)

001: MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY

Arabidopsis Description

KCS43-ketoacyl-CoA synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN49]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.