CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plastid

Predictor Summary:

nucleus 1
plastid 2
endoplasmic reticulum 2
cytosol 1
extracellular 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G113100.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	60.31	61.11
TraesCS7A01G205800.1	Wheat	endoplasmic reticulum, golgi, vacuole	60.09	60.89
TraesCS7A01G108300.1	Wheat	plasma membrane	59.65	60.71
HORVU7Hr1G023280.1	Barley	plasma membrane	57.46	57.96
HORVU7Hr1G022720.1	Barley	plasma membrane	43.2	54.87
KXG30818	Sorghum	golgi, mitochondrion	57.89	54.21
TraesCS6B01G373000.1	Wheat	endoplasmic reticulum, golgi	49.56	54.2
OQU76197	Sorghum	golgi	55.7	53.03
EER89559	Sorghum	mitochondrion, plasma membrane	56.8	52.86
KXG19727	Sorghum	mitochondrion, plastid	56.58	52.33
KXG19733	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	53.51	50.73
PGSC0003DMT400037757	Potato	plastid	50.44	49.89
KRH35956	Soybean	plasma membrane	53.07	48.79
KRG90814	Soybean	cytosol, golgi, plasma membrane	52.85	48.59
EER88189	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	50.66	47.93
Bra024749.1-P	Field mustard	plasma membrane	51.97	47.69
EER92628	Sorghum	plasma membrane	51.54	47.57
EES03073	Sorghum	endoplasmic reticulum, golgi, plasma membrane	51.1	47.55
CDY42109	Canola	plasma membrane	51.75	47.48
EES00849	Sorghum	endoplasmic reticulum, golgi	51.32	47.37
VIT_14s0006g02990.t01	Wine grape	plasma membrane	51.1	47.36
Bra004034.1-P	Field mustard	plasma membrane	51.1	47.36
Solyc02g063140.2.1	Tomato	golgi	51.32	47.18
CDY07381	Canola	plasma membrane	51.32	47.08
CDY04232	Canola	plasma membrane	51.32	47.08
PGSC0003DMT400032993	Potato	plasma membrane	51.1	46.98
Solyc02g085870.2.1	Tomato	plasma membrane	51.1	46.98
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	51.1	46.98
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	50.44	46.75
AT1G25450.1	Thale cress	plasma membrane	50.44	46.75
PGSC0003DMT400062136	Potato	cytosol, golgi, plasma membrane	50.66	46.57
PGSC0003DMT400037714	Potato	plasma membrane	50.44	46.56
Solyc05g009270.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	50.22	46.36
AT1G68530.1	Thale cress	plasma membrane	50.22	46.08
KRH45255	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	50.0	45.97
GSMUA_Achr3P07400_001	Banana	plasma membrane	38.82	45.5
GSMUA_Achr5P05870_001	Banana	plasma membrane	41.89	45.48
Solyc05g009280.2.1	Tomato	golgi, plasma membrane, plastid	50.0	43.93
EES19987	Sorghum	cytosol, endoplasmic reticulum, plastid	47.37	42.11
EES06493	Sorghum	endoplasmic reticulum, peroxisome, plasma membrane, plastid	47.59	41.41
EER88601	Sorghum	endoplasmic reticulum, plasma membrane, plastid	46.05	40.7
KXG28804	Sorghum	plastid	46.05	40.23
EER95458	Sorghum	mitochondrion	46.49	40.08
EES19964	Sorghum	endoplasmic reticulum, plasma membrane, plastid	45.61	40.0
EER91722	Sorghum	peroxisome	46.49	39.63
EER91618	Sorghum	plastid	44.96	39.12
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	44.96	38.53
KXG39781	Sorghum	peroxisome	45.61	37.89
EER95395	Sorghum	cytosol, peroxisome, plasma membrane	39.91	33.52
EES19986	Sorghum	cytosol	6.14	12.67

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	EntrezGene:8061531
InterPro:ACP_syn_III_C	UniProt:C5Z837	EnsemblPlants:EER89567	ProteinID:EER89567	ProteinID:EER89567.1	InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF12	MetaCyc:PWY-4381	MetaCyc:PWY-5080	MetaCyc:PWY-5972	MetaCyc:PWY-6433
MetaCyc:PWY-6598	MetaCyc:PWY-7036	MetaCyc:PWY-7601	MetaCyc:PWY-7602	MetaCyc:PWY-7619	MetaCyc:PWY-7724
MetaCyc:PWY-7725	EnsemblPlantsGene:SORBI_3010G108600	SUPFAM:SSF53901	unigene:Sbi.12514	TMHMM:TMhelix	InterPro:Thiolase-like
UniParc:UPI0001A89A0F	RefSeq:XP_002438200.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:10801407..10803603

Molecular Weight (calculated)

50939.2 Da

IEP (calculated)

8.284

GRAVY (calculated)

0.116

Length

456 amino acids

Sequence
(BLAST)

001: MIAMILEVTQ QLCQDRLLTL STNNLPPIHH LLVFLLITVV TVKYLIRHPR RVYLVEYTCF GPDSKYRVAP ASMIEYFHLA NLLDDDNISF LSNIYRRSGL
101: GDETCLPSSY HYIPFIPSLS MARMEAELVI FTVIDDLFAK ASIEPSKIDI LIVNCSAMTM VPSMTDMIIN RYKLRRDIQN MQLSGMGCSA GLIAVGLASN
201: LLQIMPYGAN ALVVSTENVT CNYYVGKKRS MQLTNILFRM GGAAVLLSNS SANARFQLLH TVRKSTAAQD NAYHCVFHEE DDEGNLGLNL SKNLVAVAGE
301: ALKANISTSA RLLLPVSEQL SFLLSSIAQK VFLKKSSWQY VPKFGLAVEH FCIHAGGRAV IDAVQRSLDL SDEQVEPSRM TLHRFGNTSS SSVWYEMAYC
401: EAKQLMRKGD RVWMIGFGSG YKCNSAVWKC ILPARSADSA WANCIHRYPM EVPKQV

Best Arabidopsis Sequence Match ( AT1G04220.1 )
(BLAST)

001: MNENHIQSDH MNNTIHVTNK KLPNFLLSVR LKYVKLGYHY LISNAVYILI LPVGLLAATS SSFSLTDLTL LYNHLLKFHF LSSTLFAALL IFLTTLYFTT
101: RPRRIFLLDF ACYKPDSSLI CTRETFMDRS QRVGIFTEDN LAFQQKILER SGLGQKTYFP EALLRVPPNP CMSEARKEAE TVMFGAIDAV LEKTGVNPKD
201: IGILVVNCSL FNPTPSLSAM IVNKYKLRGN VLSYNLGGMG CSAGLISIDL AKQLLQVQPN SYALVVSTEN ITLNWYLGND RSMLLSNCIF RMGGAAVLLS
301: NRSSDRCRSK YQLIHTVRTH KGSDDNAFNC VYQREDNDDN KQIGVSLSKN LMAIAGEALK TNITTLGPLV LPMSEQLLFF ATLVARKVFN VKKIKPYIPD
401: FKLAFEHFCI HAGGRAVLDE IEKNLDLSEW HMEPSRMTLN RFGNTSSSSL WYELAYSEAK GRIKRGDRTW QIAFGSGFKC NSAVWRALRT IDPSKEKKKK
501: TNPWIDEIHE FPVPVPRTSP VTSSSESR

Arabidopsis Description

KCS23-ketoacyl-CoA synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEP9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.