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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:
  • plastid 3
  • endoplasmic reticulum 2
  • cytosol 1
  • extracellular 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane, plastid
Any Predictor:cytosol, plastid, secretory
BaCelLo:plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
Plant-mPloc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d039053_P001 Maize plasma membrane 95.38 96.5
Zm00001d009608_P001 Maize plasma membrane 91.15 93.86
Os05t0568000-02 Rice plasma membrane 91.54 92.61
TraesCS1D01G414600.1 Wheat peroxisome 91.54 90.67
TraesCS1B01G436300.1 Wheat endoplasmic reticulum, plasma membrane, plastid 91.35 90.48
TraesCS1A01G406200.1 Wheat plasma membrane 90.77 90.42
CDX89699 Canola cytosol 50.96 81.54
GSMUA_Achr6P27270_001 Banana cytosol, peroxisome, plasma membrane 65.58 80.81
HORVU1Hr1G089710.3 Barley plastid 90.77 80.14
GSMUA_Achr2P08980_001 Banana golgi, peroxisome, plasma membrane 70.0 78.79
Solyc04g080450.1.1 Tomato golgi, peroxisome, plasma membrane 78.08 78.53
PGSC0003DMT400009451 Potato cytosol, peroxisome, plasma membrane 78.08 78.23
VIT_18s0001g12550.t01 Wine grape cytosol, peroxisome, plasma membrane 76.54 78.19
CDX81929 Canola plasma membrane 76.35 77.84
Bra031081.1-P Field mustard plasma membrane 76.35 77.69
CDY21665 Canola plasma membrane 76.15 77.65
CDY29431 Canola plasma membrane 72.12 77.48
Bra025738.1-P Field mustard plasma membrane 75.38 77.47
KRH15203 Soybean plasma membrane 75.96 77.45
Bra037304.1-P Field mustard cytosol, endoplasmic reticulum, plasma membrane 67.69 77.19
CDY47457 Canola cytosol, endoplasmic reticulum, plasma membrane 57.69 77.12
AT1G19440.1 Thale cress golgi, peroxisome, plasma membrane 76.35 76.94
KRH51526 Soybean plasma membrane 65.38 76.75
KRH05829 Soybean cytosol, peroxisome, plasma membrane 75.58 76.61
CDY26665 Canola cytosol, peroxisome, plasma membrane 72.69 76.36
GSMUA_Achr9P06980_001 Banana cytosol, golgi, peroxisome 68.85 76.01
AT2G16280.1 Thale cress golgi, peroxisome, plasma membrane 73.85 75.0
CDX71278 Canola cytosol, peroxisome, plasma membrane 73.08 74.95
CDY46211 Canola cytosol, peroxisome, plasma membrane 72.88 74.75
Bra001974.1-P Field mustard cytosol, peroxisome, plasma membrane 72.69 74.56
GSMUA_Achr5P09090_001 Banana golgi, peroxisome, plasma membrane 57.31 71.12
AT4G34510.1 Thale cress plasma membrane 66.15 70.64
CDX76286 Canola golgi 64.23 70.46
CDY46243 Canola golgi 64.04 70.25
CDY10355 Canola cytosol 34.81 70.16
CDY47458 Canola cytosol 6.73 70.0
Bra034634.1-P Field mustard golgi 63.46 69.62
CDY26762 Canola endoplasmic reticulum, peroxisome, plasma membrane 62.5 68.86
EES19987 Sorghum cytosol, endoplasmic reticulum, plastid 67.31 68.23
EES06493 Sorghum endoplasmic reticulum, peroxisome, plasma membrane, plastid 67.12 66.6
EER92628 Sorghum plasma membrane 63.08 66.4
EER88601 Sorghum endoplasmic reticulum, plasma membrane, plastid 65.58 66.09
Bra036405.1-P Field mustard cytosol, plasma membrane, plastid 55.58 62.69
CDX69040 Canola cytosol, endoplasmic reticulum, plasma membrane, plastid 55.0 61.64
AT2G15090.1 Thale cress golgi 56.92 61.54
CDX89700 Canola endoplasmic reticulum, golgi, plasma membrane 50.96 61.48
CDX75415 Canola cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 54.81 61.42
CDX71202 Canola endoplasmic reticulum, golgi, plasma membrane 56.15 61.22
CDY02266 Canola endoplasmic reticulum, golgi, plasma membrane 52.31 61.12
Bra017641.1-P Field mustard golgi 56.54 61.0
CDY17465 Canola plasma membrane 55.0 60.21
CDX72475 Canola endoplasmic reticulum, golgi 48.85 60.05
AT4G34250.1 Thale cress endoplasmic reticulum, golgi 56.92 60.04
Bra013081.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 55.96 59.75
AT4G34520.1 Thale cress golgi 57.88 59.49
CDY49290 Canola endoplasmic reticulum, golgi 48.08 59.1
Bra034635.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 57.31 58.89
CDX76287 Canola endoplasmic reticulum, golgi, plasma membrane 56.92 58.5
KXG28804 Sorghum plastid 58.08 57.85
EER95395 Sorghum cytosol, peroxisome, plasma membrane 58.65 56.17
EER91722 Sorghum peroxisome 56.54 54.95
EES08876 Sorghum cytosol, endoplasmic reticulum, plasma membrane 54.04 52.82
KXG30818 Sorghum golgi, mitochondrion 48.85 52.16
EER89559 Sorghum mitochondrion, plasma membrane 48.65 51.63
KXG39781 Sorghum peroxisome 54.23 51.37
KXG19727 Sorghum mitochondrion, plastid 48.65 51.32
EER95458 Sorghum mitochondrion 49.62 48.77
EER91618 Sorghum plastid 48.46 48.09
KXG19733 Sorghum endoplasmic reticulum, plasma membrane, vacuole 43.65 47.19
EER88189 Sorghum endoplasmic reticulum, plasma membrane, vacuole 42.88 46.27
EES03073 Sorghum endoplasmic reticulum, golgi, plasma membrane 43.46 46.12
EER89567 Sorghum endoplasmic reticulum, golgi, plastid 40.0 45.61
OQU76197 Sorghum golgi 41.15 44.68
EES00849 Sorghum endoplasmic reticulum, golgi 42.12 44.33
EES19986 Sorghum cytosol 7.88 18.55
Protein Annotations
KEGG:00061+2.3.1.180KEGG:00062+2.3.1.199InterPro:3-ktacl-CoA_synGene3D:3.40.47.10MapMan:5.1.6.1.1EntrezGene:8074611
InterPro:ACP_syn_III_CUniProt:C5YVX8EnsemblPlants:EES19964ProteinID:EES19964ProteinID:EES19964.1InterPro:FAE1_typ3_polyketide_synth
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0006629GO:GO:0006633GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016740
GO:GO:0016746GO:GO:0016747InterPro:IPR016039PFAM:PF08392PFAM:PF08541PIRSF:PIRSF036417
PANTHER:PTHR31561PANTHER:PTHR31561:SF65MetaCyc:PWY-4381MetaCyc:PWY-5080MetaCyc:PWY-5972MetaCyc:PWY-6433
MetaCyc:PWY-6598MetaCyc:PWY-7036MetaCyc:PWY-7601MetaCyc:PWY-7602MetaCyc:PWY-7619MetaCyc:PWY-7724
MetaCyc:PWY-7725EnsemblPlantsGene:SORBI_3009G236100SUPFAM:SSF53901unigene:Sbi.18333TMHMM:TMhelixInterPro:Thiolase-like
UniParc:UPI0001A892D4RefSeq:XP_002441534.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr9:-:57487095..57489650
Molecular Weight (calculated)
57716.2 Da
IEP (calculated)
9.603
GRAVY (calculated)
-0.042
Length
520 amino acids
Sequence
(BLAST)
001: MNGGAAPPSA ASAAAAAATP PHRRLPDFLQ SVNLKYVKLG YHYLITHLLT LMLLPLMAVI LLEAGRTDPD DLRQLWLHLQ YNLVSVLVLS AVLVFGATVY
101: VLTRPRPVYL VDFACYKPPA HLQVRFEEFM RHSKLCGFSE DALEFQRKIL ERSGLSEETY VPEAMHAIPP QPTMANARAE AETVMFGALD NLFKSTGVKP
201: KDVGVLVVNC SLFNPTPSLS AMIVNKYKLR GNIRSFNLGG MGCSAGVIAV DLARDMLQVH RGTYAVVVST ENITQNWYFG NRKSMLIPNC LFRVGGSAVL
301: LSNRGADRRR AKYSLRHVVR THKGADDKAF NCVYQEQDGE GKTGVSLSKD LMAIAGGALK TNITTLGPLV LPFSEQLLFF ATLVAKKLLS AKMKPYIPDF
401: KLAFEHFCIH AGGRAVIDEL EKNLQLSPAH VEASRMTLHR FGNTSSSSIW YELAYMEAKG RVRRGHRIWQ IAFGSGFKCN SAVWHALRNV KPSPDNPWED
501: CIDRYPVELV DGFPTHKPQQ
Best Arabidopsis Sequence Match ( AT1G19440.1 )
(BLAST)
001: MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY
Arabidopsis Description
KCS43-ketoacyl-CoA synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN49]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.