Factsheet for VIT_18s0001g12550.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0063g02640.t01	Wine grape	plasma membrane	83.5	84.33
Zm00001d009608_P001	Maize	plasma membrane	77.6	78.22
GSMUA_Achr6P27270_001	Banana	cytosol, peroxisome, plasma membrane	64.05	77.25
Zm00001d039053_P001	Maize	plasma membrane	77.8	77.04
Os05t0568000-02	Rice	plasma membrane	77.6	76.85
GSMUA_Achr2P08980_001	Banana	golgi, peroxisome, plasma membrane	69.55	76.62
EES19964	Sorghum	endoplasmic reticulum, plasma membrane, plastid	78.19	76.54
GSMUA_Achr9P06980_001	Banana	cytosol, golgi, peroxisome	69.16	74.73
TraesCS1A01G406200.1	Wheat	plasma membrane	75.83	73.95
TraesCS1B01G436300.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	76.23	73.9
TraesCS1D01G414600.1	Wheat	peroxisome	75.83	73.52
GSMUA_Achr5P09090_001	Banana	golgi, peroxisome, plasma membrane	57.37	69.69
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	66.4	66.14
HORVU1Hr1G089710.3	Barley	plastid	75.83	65.53
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	63.26	64.92
VIT_14s0006g02990.t01	Wine grape	plasma membrane	62.67	64.84
VIT_05s0020g04540.t01	Wine grape	plasma membrane	65.03	63.53
VIT_15s0048g02720.t01	Wine grape	cytosol, peroxisome, plasma membrane	61.49	59.06
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	56.19	58.13
VIT_11s0016g04700.t01	Wine grape	plastid	67.58	55.75
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	56.97	54.72
VIT_07s0141g00090.t01	Wine grape	cytosol	44.6	52.91
VIT_09s0070g00300.t01	Wine grape	cytosol, peroxisome, plasma membrane	49.12	49.41
VIT_10s0042g01230.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	43.42	49.33
VIT_07s0141g00070.t01	Wine grape	cytosol	37.92	48.25
VIT_12s0034g01840.t01	Wine grape	endoplasmic reticulum, golgi	43.42	48.15
VIT_07s0141g00030.t01	Wine grape	endoplasmic reticulum, extracellular	40.47	46.5
VIT_07s0141g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	41.06	44.85

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:100260817	wikigene:100260817	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10
MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C	ProteinID:CCB45949	ProteinID:CCB45949.1	UniProt:F6H048	InterPro:FAE1_typ3_polyketide_synth
EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	EntrezGene:LOC100260817	wikigene:LOC100260817
PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF65	SUPFAM:SSF53901
TIGR:TC61005	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI00019854A0	ArrayExpress:VIT_18s0001g12550	EnsemblPlantsGene:VIT_18s0001g12550
EnsemblPlants:VIT_18s0001g12550.t01	unigene:Vvi.5676	RefSeq:XP_002282403	RefSeq:XP_002282403.1	:	:

Description

3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:F6H048]

Coordinates

chr18:+:10749869..10751576

Molecular Weight (calculated)

57035.4 Da

IEP (calculated)

9.356

GRAVY (calculated)

-0.037

Length

509 amino acids

Sequence
(BLAST)

001: MDTEIPGGGA AVGVQIHCSR RLPDFLQSVN LKYVKLGYHY LVSNLLTLCL VPLMIGILIQ ASQTNPDDLR HLWLHLQYNL VSVIICSAIL VSATTVYITR
101: RPRPVFLVDY ACYRPPDHLQ VRFHQFMDHS KLTGDFTEST LEFQRKILER SGLGEETYVP QAMHYLPPRP SMSAAREEAE QVMFGALDAL FSDTCIKPKD
201: IGILVVNCSL FNPTPSLSAM IVNKYKLRGN IRSFNLGGMG CSAGVIAIDL ASDLLQVHRN TYAVVVSTEN ITQNWYFGND RSMLIPNCLF RVGGAAILLS
301: NRSRDRRRAK YRLVHVVRTH RGADDKAFSC VYQKQDDVGK TGVSLSKDLM AIAGGALKTN ITTLGPLVLP ISEQLLFFAT LLVKKLLKSN AKPYIPDFKL
401: AFNHFCIHAG GRAVIDELEK NLQLLPEHVE ASRMTLHRFG NTSSSSIWYE LAYTEAKGRM RKGNRVWQIA FGSGFKCNSA VWEALRHVQP SRNGPWEDCI
501: DKYPVKVVT

Best Arabidopsis Sequence Match ( AT1G19440.1 )
(BLAST)

001: MDGAGESRLG GDGGGDGSVG VQIRQTRMLP DFLQSVNLKY VKLGYHYLIS NLLTLCLFPL AVVISVEASQ MNPDDLKQLW IHLQYNLVSI IICSAILVFG
101: LTVYVMTRPR PVYLVDFSCY LPPDHLKAPY ARFMEHSRLT GDFDDSALEF QRKILERSGL GEDTYVPEAM HYVPPRISMA AAREEAEQVM FGALDNLFAN
201: TNVKPKDIGI LVVNCSLFNP TPSLSAMIVN KYKLRGNIRS YNLGGMGCSA GVIAVDLAKD MLLVHRNTYA VVVSTENITQ NWYFGNKKSM LIPNCLFRVG
301: GSAVLLSNKS RDKRRSKYRL VHVVRTHRGA DDKAFRCVYQ EQDDTGRTGV SLSKDLMAIA GETLKTNITT LGPLVLPISE QILFFMTLVV KKLFNGKVKP
401: YIPDFKLAFE HFCIHAGGRA VIDELEKNLQ LSPVHVEASR MTLHRFGNTS SSSIWYELAY IEAKGRMRRG NRVWQIAFGS GFKCNSAIWE ALRHVKPSNN
501: SPWEDCIDKY PVTLSY

Arabidopsis Description

KCS43-ketoacyl-CoA synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN49]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.