Factsheet for VIT_07s0141g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0141g00070.t01	Wine grape	cytosol	79.01	87.5
VIT_07s0141g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	87.36	83.05
VIT_07s0141g00090.t01	Wine grape	cytosol	66.14	68.3
Solyc09g065800.2.1	Tomato	endoplasmic reticulum, plasma membrane	53.05	52.11
PGSC0003DMT400049683	Potato	endoplasmic reticulum, golgi	51.24	51.01
Solyc09g065780.2.1	Tomato	endoplasmic reticulum, golgi	50.34	50.45
VIT_05s0020g04540.t01	Wine grape	plasma membrane	55.53	47.22
PGSC0003DMT400051894	Potato	endoplasmic reticulum, plasma membrane	47.4	46.46
VIT_04s0008g04710.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	50.34	43.64
VIT_12s0034g01840.t01	Wine grape	endoplasmic reticulum, golgi	43.79	42.27
VIT_14s0006g02990.t01	Wine grape	plasma membrane	46.05	41.46
VIT_01s0011g03490.t01	Wine grape	cytosol, golgi, plasma membrane	45.82	40.93
VIT_15s0048g02720.t01	Wine grape	cytosol, peroxisome, plasma membrane	48.53	40.57
VIT_18s0001g12550.t01	Wine grape	cytosol, peroxisome, plasma membrane	46.5	40.47
VIT_03s0063g02640.t01	Wine grape	plasma membrane	45.82	40.28
VIT_19s0093g00440.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	44.7	40.24
VIT_10s0042g01230.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	40.41	39.96
VIT_11s0016g04700.t01	Wine grape	plastid	51.92	37.28
VIT_09s0070g00300.t01	Wine grape	cytosol, peroxisome, plasma membrane	41.99	36.76
VIT_04s0008g02250.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	43.34	36.23

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	EntrezGene:100245920	wikigene:100245920	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10
MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C	EMBL:AM472719	ProteinID:CAN83620	ProteinID:CAN83620.1	ProteinID:CCB44692
ProteinID:CCB44692.1	ncoils:Coil	UniProt:F6GXK6	InterPro:FAE1_typ3_polyketide_synth	EMBL:FN594965	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
InterPro:IPR016039	EntrezGene:LOC100245920	wikigene:LOC100245920	PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417
PANTHER:PTHR31561	PANTHER:PTHR31561:SF10	SUPFAM:SSF53901	SignalP:SignalP-noTM	InterPro:Thiolase-like	UniParc:UPI0002109508
ArrayExpress:VIT_07s0141g00030	EnsemblPlantsGene:VIT_07s0141g00030	EnsemblPlants:VIT_07s0141g00030.t01	unigene:Vvi.13466	RefSeq:XP_002275034	RefSeq:XP_002275034.2
SEG:seg	:	:	:	:	:

Description

3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:F6GXK6]

Coordinates

chr7:-:13942..16358

Molecular Weight (calculated)

49566.2 Da

IEP (calculated)

8.059

GRAVY (calculated)

-0.003

Length

443 amino acids

Sequence
(BLAST)

001: MVGLTLIAFM LSLFAFGSSP KIFLVDFACY KPPNSLACSK EMVIERLRLH GNFSDESLEF MKKLMKASGL GEATYLSEGL LKEPLDTSTK AARKEAEMVV
101: FGAVDELLGK TGVKGEEIGI VVVHSSIFNT VPSLASMIVN RYKLSENVLS YNLSGMGCSA GLLSIGLAKD LLKVHRNLYA LVVTIEIITQ GCYMGNEPPK
201: LIGNCIFRMG GVAVFLSNRS SDRVGSKYQL IHTVHTNTAS SDRSYNCIIQ EEDHEGHMGI TITKDLLVVA SEIIKSNIAT LAPLILPTSE RFLYLVNYLI
301: RYFHMANIEP YVPSFKHAMD HFFPHVGGKP ILDQVEKNLR MSERQMEASR MTFYRFGNTS SSSVWYELAY AEAKGRIKRG DRVWQIAYGS GFKCSSVFWK
401: AIRTIDREKM NPWSDVIDEF PVVDLYPQST ETSLYTFEST KSK

Best Arabidopsis Sequence Match ( AT1G04220.1 )
(BLAST)

001: MNENHIQSDH MNNTIHVTNK KLPNFLLSVR LKYVKLGYHY LISNAVYILI LPVGLLAATS SSFSLTDLTL LYNHLLKFHF LSSTLFAALL IFLTTLYFTT
101: RPRRIFLLDF ACYKPDSSLI CTRETFMDRS QRVGIFTEDN LAFQQKILER SGLGQKTYFP EALLRVPPNP CMSEARKEAE TVMFGAIDAV LEKTGVNPKD
201: IGILVVNCSL FNPTPSLSAM IVNKYKLRGN VLSYNLGGMG CSAGLISIDL AKQLLQVQPN SYALVVSTEN ITLNWYLGND RSMLLSNCIF RMGGAAVLLS
301: NRSSDRCRSK YQLIHTVRTH KGSDDNAFNC VYQREDNDDN KQIGVSLSKN LMAIAGEALK TNITTLGPLV LPMSEQLLFF ATLVARKVFN VKKIKPYIPD
401: FKLAFEHFCI HAGGRAVLDE IEKNLDLSEW HMEPSRMTLN RFGNTSSSSL WYELAYSEAK GRIKRGDRTW QIAFGSGFKC NSAVWRALRT IDPSKEKKKK
501: TNPWIDEIHE FPVPVPRTSP VTSSSESR

Arabidopsis Description

KCS23-ketoacyl-CoA synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEP9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.