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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 6
  • golgi 5
  • cytosol 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc09g065780.2.1 Tomato endoplasmic reticulum, golgi 77.61 79.19
VIT_07s0141g00070.t01 Wine grape cytosol 47.67 53.75
VIT_07s0141g00030.t01 Wine grape endoplasmic reticulum, extracellular 52.11 53.05
VIT_07s0141g00090.t01 Wine grape cytosol 49.45 51.98
VIT_07s0141g00060.t01 Wine grape endoplasmic reticulum, plasma membrane 50.78 49.14
Solyc09g083050.2.1 Tomato plasma membrane 48.56 42.69
Solyc03g005320.2.1 Tomato plasma membrane 48.12 41.81
Solyc06g053870.2.1 Tomato mitochondrion 43.9 40.74
Solyc08g067410.1.1 Tomato plasma membrane 45.45 40.59
Solyc06g065560.1.1 Tomato nucleus 46.12 40.55
Solyc12g006820.1.1 Tomato plasma membrane 44.79 40.4
Solyc02g085870.2.1 Tomato plasma membrane 44.35 40.32
Solyc02g063140.2.1 Tomato golgi 44.12 40.12
Solyc05g009270.2.1 Tomato endoplasmic reticulum, golgi, plasma membrane 43.46 39.68
Solyc05g013220.2.1 Tomato endoplasmic reticulum, golgi, plastid 42.35 38.74
Solyc05g009280.2.1 Tomato golgi, plasma membrane, plastid 44.12 38.34
Solyc06g053900.2.1 Tomato cytosol, plasma membrane, plastid 41.91 38.18
Solyc10g009240.2.1 Tomato peroxisome 44.35 37.81
Solyc04g080450.1.1 Tomato golgi, peroxisome, plasma membrane 41.69 36.36
Solyc08g067260.2.1 Tomato cytosol, peroxisome, plasma membrane 36.36 32.41
Protein Annotations
KEGG:00061+2.3.1.180KEGG:00062+2.3.1.199InterPro:3-ktacl-CoA_synGene3D:3.40.47.10MapMan:5.1.6.1.1InterPro:ACP_syn_III_C
InterPro:FAE1_typ3_polyketide_synthGO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0006629GO:GO:0006633
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0016740GO:GO:0016746GO:GO:0016747InterPro:IPR016039UniProt:K4CUK6PFAM:PF08392
PFAM:PF08541PIRSF:PIRSF036417PANTHER:PTHR31561PANTHER:PTHR31561:SF10SUPFAM:SSF53901EnsemblPlantsGene:Solyc09g065800.2
EnsemblPlants:Solyc09g065800.2.1TMHMM:TMhelixInterPro:Thiolase-likeUniParc:UPI000276C936::
Description
3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:K4CUK6]
Coordinates
chr9:-:64070752..64072370
Molecular Weight (calculated)
51196.9 Da
IEP (calculated)
7.429
GRAVY (calculated)
-0.122
Length
451 amino acids
Sequence
(BLAST)
001: MELLHPSNLF PIFVPSLILV LFWCKIMRRQ RVFLVDFACY RPPKDQQICR QTFIEKSSRS LNSNKNTLEF MDRILQRVGL GEKTYLSKGL LKEPPDMSAK
101: AAKEEVEMAI FGSIDELLLK TGVQCEDIDI LVTVCGVYNI MPSLSSVIVK RYNLRHDIHT YNITGMGCTA GLVALGLVQN LLKVHDNSCA LVVTSDSITE
201: NVYKGNDRSK LLSNCIFRVG AVALLLSNKP SDLNTSKYEL IHTVRSQTSN DDRSYNCIFM EEDVEGHRGI TINKDLLYAA MNTIRLNIST IAPLVLSLSE
301: KLRYLVNLIA QYFHMIKSNV DRPYNPDFSK TVNHFFPHVG GKPVLDDLQK KLGFSDEQME ASRMTLYRFG NTSTCSVWYE VAYVEAKGRV RKGDTLWQIA
401: FGSGFKCTSV IWRANRSIDR DEVNPWSDEI DEFPVDLSQM ETLSDLFVAS K
Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)
001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ
Arabidopsis Description
KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.