Factsheet for Solyc03g005320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034973	Potato	plasma membrane	98.07	98.07
Solyc09g083050.2.1	Tomato	plasma membrane	86.71	87.72
KRH34362	Soybean	plasma membrane	82.08	82.4
VIT_05s0020g04540.t01	Wine grape	plasma membrane	82.66	82.34
KRG92437	Soybean	plasma membrane	81.7	82.01
KRH69063	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	81.31	81.0
KRH31633	Soybean	endoplasmic reticulum, nucleus, plastid	79.96	80.27
Solyc06g065560.1.1	Tomato	nucleus	72.83	73.68
Solyc08g067410.1.1	Tomato	plasma membrane	71.68	73.66
Os11t0591200-01	Rice	mitochondrion	61.27	73.61
Solyc12g006820.1.1	Tomato	plasma membrane	68.4	71.0
TraesCS6A01G073300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	67.44	68.9
TraesCS4D01G148300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	67.63	68.55
TraesCS6B01G098300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	67.63	68.42
TraesCS4A01G164400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	66.47	67.38
Solyc05g013220.2.1	Tomato	endoplasmic reticulum, golgi, plastid	63.97	67.34
Zm00001d048953_P001	Maize	mitochondrion, plastid	66.47	67.25
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	62.62	66.6
KXG28804	Sorghum	plastid	66.28	65.9
Solyc06g053870.2.1	Tomato	mitochondrion	60.69	64.81
TraesCS6D01G071600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	67.63	64.4
Solyc04g080450.1.1	Tomato	golgi, peroxisome, plasma membrane	61.85	62.09
Solyc06g053900.2.1	Tomato	cytosol, plasma membrane, plastid	58.38	61.21
Solyc02g085870.2.1	Tomato	plasma membrane	57.23	59.88
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	61.27	59.77
Solyc10g009240.2.1	Tomato	peroxisome	60.5	59.36
Solyc02g063140.2.1	Tomato	golgi	56.45	59.07
Solyc05g009270.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	54.34	57.09
Solyc05g009280.2.1	Tomato	golgi, plasma membrane, plastid	55.68	55.68
Solyc08g067260.2.1	Tomato	cytosol, peroxisome, plasma membrane	50.29	51.58
Solyc09g065800.2.1	Tomato	endoplasmic reticulum, plasma membrane	41.81	48.12
Solyc09g065780.2.1	Tomato	endoplasmic reticulum, golgi	39.69	46.61

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:K4BDV6	PFAM:PF08392
PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF25	SUPFAM:SSF53901	EnsemblPlantsGene:Solyc03g005320.2
EnsemblPlants:Solyc03g005320.2.1	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0002769077	:	:

Description

3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:K4BDV6]

Coordinates

chr3:-:183106..186591

Molecular Weight (calculated)

58731.1 Da

IEP (calculated)

9.379

GRAVY (calculated)

-0.033

Length

519 amino acids

Sequence
(BLAST)

001: MGDENKKNSV SSETARISVE VNNLPNFLQS IRLKYVKLGY HYLISNAMYL FLVPVLGVLC VHVMTISVED LIQLLDKLKF NLITVILCSA VVVFLGTLYF
101: MTRPRKVYLV DFSCYKPKPD VMCSKETFME RSKQAGIFTE ENLAFQKKIL ERSGLGQKTY FPEALLRVPA EPNMAEARKE AEMVMFGAID ELLAKTRVKA
201: KDIGILVVNC SLFNPTPSLS AMIVNHYKLR GNVMSYNLGG MGCSAGLISI DLAKQLLQVN PNSYALVVSM ENITLNWYFG NNRSMLVSNC IFRMGGAAIL
301: LSNRSTDRRR SKYQLIHTVR THKGADDRSY GCVFQEEDEK KEIGVALSKD LMAVAGEALK TNITTLGPLV LPMSEQLLFF MTLVARKIFK MKIKPYIPDF
401: KLAFEHFCIH AGGRAVLDEL EKNLELSQWH MEPSRMTLYR FGNTSSSSLW YELAYTEAKG RIKKGDRTWQ IAFGSGFKCN SAVWRALKTI NPAKEKNPWM
501: DEVHEFPVEV PRIVTINDS

Best Arabidopsis Sequence Match ( AT2G26640.1 )
(BLAST)

001: MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV
101: YLVNFSCFKP DESRKCTKKI FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG AIDELLAKTN VNPKDIGILI
201: VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD
301: RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF
401: CIHAGGRAVL DELEKNLKLT EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV RSVNPKKEKN PWMDEIHEFP
501: VEVPKVSTI

Arabidopsis Description

KCS113-ketoacyl-CoA synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48780]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.